| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0311 |
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| Symbol | |
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| ID | 6373967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 308651 |
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| End bp | 310711 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642682826 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_001958761 |
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| Protein GI | 189499291 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000765194 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000149444 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAGAATT TTCCGATTTC CATGTATCAG TATAGCAGGA GGCTGACCCG TGAGGTTGGT
TTCGGTTCGC TATCTCTCGG CGGCTATCAG CCCGTCAGGG TAGAGTCGAT GACGACAACG
CATACTATGG ATACAAGCGC TTCCGTGGAG CAGTGCCGGA GGCTCCATGA AGCAGGTTGT
GAGATTATCC GCCTGACGGT TCCTACAGAG AAGGACGCTG AAAATCTCAA GACCATTCGT
GACCAGCTTC GGCGGGATGG AGTTGCTACA CCGCTTGTAG CCGATATTCA TTTTTCTCAG
AAAGCCGCCC TCAAAGCGGT GGAGTTCGTC GAAAATGTCC GGATCAATCC GGGTAATTTT
GCCAATACCC AAAAATTCAC CAACGAGGAG TATACTGCGC AGTCCTATGA TTCGGAACTT
GAAAAAGTAC GGGAAGCGTT TCTTCCTCTG ATCGGGAAAG CAAAGGCATT CGGGGTGTCG
ATGAGGATTG GAACCAATCA CGGTTCGCTT TCGGACAGAA TTGTCAGCCG CTACGGAAAC
ACGCCTGAGG GGATGGTGGA AGCAGCGCTT GAATTTGCCA GAATTTGTGA AGATGAAGGG
TACTACGATT TTTTGTTTTC CATGAAGTCT TCCAATGTAA GGGTGATGAT TCAGGCTTAC
AGGCACCTTG TCGCCAGAGC GGATACCGAA CTGCGCCATG CTTATCCTTT ACATCTCGGA
GTAACCGAGG CCGGGGATGG AGATGAGGGA AGAATTAAAT CCGCGATGGG TACCGGGGCG
TTGCTGGAAG AAGGCCTTGG CGACACCATC AGGGTTTCCC TCACGGAAGA TCCCGTCAAC
GAAGTTCCGG TCGGGTTTGC GTTGGTGAAA AAGTATAATG ATTTACTGAA GGTAAAGGGC
GAAAAAGGCC ATGCGCCGGT TAACAGGATC ATCATGTCAC GTGCGGCGAG AGCTTGCTTT
GAGCTTCCTC CTTTTGATCC GTTCAGCTAC AGGAAGCGGA AGTCAGGGGT GCTGTCAACA
GCTGATGGTG ACATAGGAGG AGAGAGTCTT CCTATGGTTG AGACTGTCAC CAAAGCTTCG
GTCGCGGCCA ACCCGGAGCA GCTTCTCGCG GAGTTGCGCA GAAGGTTGGT GGTTGACAGT
GCCGACAAGG AGATCAGATC GGAACTGGTA ACCGTTCCGG CAGGTTCAGC GGTCGAATCG
GAAGCTCTTG AGCCGGTTCT TGCCGAACTC GGTGTCTGCC GGAGCCGTGT AGGTGTCGCT
ACAGGTGATG TTTCGCTTGT TCCGGATCTT CTGAAGCGTG CGGCGAGAGT TCGTTTAGAT
ATCCGTGAAG GTGAGATGAT CGATAAAACC TTTTTTGACT CGCTTGATGG TGGGGGCGCA
CTCCTGGAGT TTTGCTTTAT TCATGAGCAT GCGTCGGAAC AGGTTCCGGC TGAAGTTCTT
TCGCGAATAG CGCTGAAGAT GCAGTCGAAG GGTATTGAAA AGCTCCTTTT TTCAATACAA
TCACCTGTTC CGGTCTATGC CTATCGTTAT CTTGTTCGCG GTTTTAACGA GCAGGGCCTC
GACTATCCTC TGGTAATACG GTATCATGCC TTGAATAAAG GGCGTCTTGA GACACTTATC
GATTGCGCCA CACAGACCGG TACACTTTTC TGTGACGGCA TAGGTGATAT GCTTGCCCTG
GAGACAGACC TTGCTGAAAG TGAAGAGATC AGCCTTGCTT TTAATGTTCT GCAGGCTGCC
AGAGTGAGAA TGTCGAAAAC GGAGTTCATC TCCTGTCCGG GGTGTGGCAG AACCTATTTC
GATCTTGAAA AAACTACAGC GGTGATCAAA GCCCGGATGT CTCATCTGAA AGGGCTGAAA
ATCGGTATTA TGGGTTGTAT CGTCAATGGT CCCGGAGAGA TGGCTGACGC TGATTTCGGG
TATGTCGGTT CGGGAAAATC CGGGGTAAGT CTCTATGTTG GCAAAGAATG TGTCGCGTCT
AACATTCCTG AAAAAGATGC CGTCGACAGG CTTGTTGATC TCATCAGGTC ACATGGCCGA
TGGGTTGAAC GGGTTGCATA G
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| Protein sequence | MQNFPISMYQ YSRRLTREVG FGSLSLGGYQ PVRVESMTTT HTMDTSASVE QCRRLHEAGC
EIIRLTVPTE KDAENLKTIR DQLRRDGVAT PLVADIHFSQ KAALKAVEFV ENVRINPGNF
ANTQKFTNEE YTAQSYDSEL EKVREAFLPL IGKAKAFGVS MRIGTNHGSL SDRIVSRYGN
TPEGMVEAAL EFARICEDEG YYDFLFSMKS SNVRVMIQAY RHLVARADTE LRHAYPLHLG
VTEAGDGDEG RIKSAMGTGA LLEEGLGDTI RVSLTEDPVN EVPVGFALVK KYNDLLKVKG
EKGHAPVNRI IMSRAARACF ELPPFDPFSY RKRKSGVLST ADGDIGGESL PMVETVTKAS
VAANPEQLLA ELRRRLVVDS ADKEIRSELV TVPAGSAVES EALEPVLAEL GVCRSRVGVA
TGDVSLVPDL LKRAARVRLD IREGEMIDKT FFDSLDGGGA LLEFCFIHEH ASEQVPAEVL
SRIALKMQSK GIEKLLFSIQ SPVPVYAYRY LVRGFNEQGL DYPLVIRYHA LNKGRLETLI
DCATQTGTLF CDGIGDMLAL ETDLAESEEI SLAFNVLQAA RVRMSKTEFI SCPGCGRTYF
DLEKTTAVIK ARMSHLKGLK IGIMGCIVNG PGEMADADFG YVGSGKSGVS LYVGKECVAS
NIPEKDAVDR LVDLIRSHGR WVERVA
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