| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0193 |
|---|
| Symbol | |
|---|
| ID | 6373848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 190041 |
|---|
| End bp | 191720 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642682711 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_001958647 |
|---|
| Protein GI | 189499177 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.257292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.779806 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACTA TGAACTACGC GAAGTATGAG GCATACCCTG CTGTGGATAT AGAGGGCAGA
ACATGGCCCG ATAAGAGAAT TACAAAAGCA CCTCACTGGT GCAGTATTGA TTTGAGGGAT
GGCAACCAGG CTCTTCCGGT TCCTATGAGT GTTGAGGAAA AAGTCGAGAT GTTCAGGCTT
CTTGTCGATA TCGGATTCAA AGAGATCGAA GTCGGCTTTC CTTCGGCGGC CGCAGTTGAG
TTTCAGTTTG TCAGGCGGTT GATCGAAGAG AATCTTATAC CTGAAGATGT GACGATACAG
GTGCTGACTC AGGCAAGAGA GCATCTGATC CGCAAAACAT TCGATGCGCT TGAGGGTGTC
GGCAATGCTA TCGTACATCT CTATAATTCA ACATCGACCG TGCAGCGGGA TGTCGTTTTC
AGGATGGGGC GCGACGAGAT AAAGCGCATT GCCATGGATG GAACGCGGCT TGTTCGTGAA
TTGAAAGAGG CGTCTGGTAA TGAGGGGATT CGATTTCAGT ACAGCCCTGA AAGTTTTACC
GGTACAGAGG TCGATTACGC GCTCGAGGTC ACTCATGCGG TTATGGATGA GTGGGGAGCA
TCGGAAAACG ATCCGATAAT TATCAACCTG CCGTCGACTG TTGAGATGTC GACGCCTAAT
ATATTTGCGG ATCGCATTGA GTGGTTCTGC AGAAACATCA GGGAGCGTAA AGCGGTGATT
ATCAGTGTGC ATACACATAA TGATCGAGGC ACAGCAGTAG CTGCTGCAGA GCTTGCGGTC
ATGGCTGGTG CTGATCGGGT GGAAGGTGCG CTTTTCGGCA ACGGCGAGCG ATGCGGTAAC
CTTGATATTG TCACCATGGC GCTCAATCTG TGTACTCAGG GAGTGGATCC CGAGCTGGAT
TTCACGAATC TTGCCCATAT CAGCGACGTG TACCGGAAGA ATACACGAAT GAGCATTCAT
CCCCGACAGC CCTATTCCGG AGAGCTTGTC TACACGGCTT TTTCCGGTTC CCATCAGGAT
GCCATCAACA AGGGCATGAA GGCGATCAGG GCATCGGGAA ACAACTGCTG GAATGTTCCC
TATCTTCCTA TTGATCCTCG GGATGTAGGG TGTTCCTATA AAGCGATTGT CCGGATCAAC
AGTCAGTCCG GCAAGGGCGG CGTGGCGTAT ATCATGGAAA ATGATTTCGG ATATGAAATT
CCGAAATGGA TGCAGCCTCA TTTCGGTTCG GCGGTACAGT CAAAGGTTGA CACTACCGGA
CGGGAGCTTC TCCCTGAAGA GATTCGTGAG TTGTTTCATG AAGAGTATAT ACGCATGCAT
GATCCGTATC TTATGAAAAA ATGCACGATC AAATGGGAGG ATCAGGATCC TGAACGTGAC
GATGAGGTCT CGACAACCCT CTCATGCATT CTTCAGCATA ACGATACCGA GCGTTCTTTT
ACTGCGAACG GCAACGGGCC GGTTGACGCG TTTGTGAGGG GAATGATGCA GCAGACCGGT
CTTGTTTTCA GTGTTGACGA GTATGCGGAA CATTCTATCG GTCACACAGC CGATGCAAAA
GCTCTGGCCT ATATACGGAT AAAAGAGGAG GGAGGACGAG AGTCGATAGG CGCGGGAATT
GATTCCAACA TCAGTCTTGC GTCGATCAAG GCGGTGCTCA GCGCTGTGAA CAGACTGTAA
|
|---|
| Protein sequence | MATMNYAKYE AYPAVDIEGR TWPDKRITKA PHWCSIDLRD GNQALPVPMS VEEKVEMFRL
LVDIGFKEIE VGFPSAAAVE FQFVRRLIEE NLIPEDVTIQ VLTQAREHLI RKTFDALEGV
GNAIVHLYNS TSTVQRDVVF RMGRDEIKRI AMDGTRLVRE LKEASGNEGI RFQYSPESFT
GTEVDYALEV THAVMDEWGA SENDPIIINL PSTVEMSTPN IFADRIEWFC RNIRERKAVI
ISVHTHNDRG TAVAAAELAV MAGADRVEGA LFGNGERCGN LDIVTMALNL CTQGVDPELD
FTNLAHISDV YRKNTRMSIH PRQPYSGELV YTAFSGSHQD AINKGMKAIR ASGNNCWNVP
YLPIDPRDVG CSYKAIVRIN SQSGKGGVAY IMENDFGYEI PKWMQPHFGS AVQSKVDTTG
RELLPEEIRE LFHEEYIRMH DPYLMKKCTI KWEDQDPERD DEVSTTLSCI LQHNDTERSF
TANGNGPVDA FVRGMMQQTG LVFSVDEYAE HSIGHTADAK ALAYIRIKEE GGRESIGAGI
DSNISLASIK AVLSAVNRL
|
|---|
| |