| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0020 |
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| Symbol | dapD |
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| ID | 6373662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 24316 |
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| End bp | 25173 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642682541 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001958490 |
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| Protein GI | 189499020 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000761823 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTTG AAGAAGTAAG AACACGTATA GAAGAACTGG CAGCTCTGTC TGCTCCGGAA
TTACAGAAAC ACGATGACGC GCGAGAGGTT TTCAGCGCAT TCAAGGTTCT GTTGAACAGC
GGCCAGGCAA GAGCGGCGGA GAAAAAAGAC AGCTCCTGGC AGGTAAACGC CTGGGTAAAA
CAGGGGATTC TCCTGGGGAT GAAGCTTGGC ATACTCTGCG AGAGTTCGAT TGCTTTTCCC
GAAGGCAATG ACTGGACATT TGTTGACAAG GATACCTATC CGGTCAGGCG CTTTGTAAAG
GAAGATGGTA TCCGAATTGT GCCCGGAGGT TCTTCAGTGA GGGATGGCGC CTATCTGGCT
TCTTCAGTGG TTATGATGCC CCCGGCATAC GTCAATGTCG GGGCATATGT CGATGCGGGC
AGCATGATTG ATTCACACGC TCTTGTAGGC AGCTGCGCAC AGGTGGGCCG AAACGTTCAT
CTTTCTGCTG CGGTTCAGGT CGGCGGTGTT CTTGAACCGA TAGGCGCTGT TCCGGTAATC
ATTGAAGATG ATGTCATGGT CGGGGGGAAC TGCGGCATTT ATGAAGGCAC GATCGTCCGT
TCGCGATCGG TGATCGGCAC AGGCGTCATT CTCAACGGCT CTACACCTGT CTATGATCTG
GTAAACAAAA GCATTATCAG AAAAACCCCT GAAACCCCTC TTACGATTCC TGAAGGAGCA
GTTGTCGTTG CCGGTTCCCG AAAGATACAG GGGGAGTTCG CCGCTGAGCA CGGTCTTTCA
ATCTACACTC CCTTGATCGT CAAGTACAGG GATGAAAAAA CGGATAGTGT GACGGCGCTG
GAAAGCGCGT TGCGATGA
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| Protein sequence | MQLEEVRTRI EELAALSAPE LQKHDDAREV FSAFKVLLNS GQARAAEKKD SSWQVNAWVK
QGILLGMKLG ILCESSIAFP EGNDWTFVDK DTYPVRRFVK EDGIRIVPGG SSVRDGAYLA
SSVVMMPPAY VNVGAYVDAG SMIDSHALVG SCAQVGRNVH LSAAVQVGGV LEPIGAVPVI
IEDDVMVGGN CGIYEGTIVR SRSVIGTGVI LNGSTPVYDL VNKSIIRKTP ETPLTIPEGA
VVVAGSRKIQ GEFAAEHGLS IYTPLIVKYR DEKTDSVTAL ESALR
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