Gene Cphamn1_0011 details

Gene Information

• Locus tag: Cphamn1_0011
• Symbol: secD
• ID: 6373653
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium phaeobacteroides BS1
• Kingdom: Bacteria
• Replicon accession: NC_010831
• Strand: +
• Start bp: 14086
• End bp: 15903
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 642682532
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001958481
• Protein GI: 189499011
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.019109
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAAACA ACCGGTTTAA AAGTATCCTT ATTGTCGCCT TGACGGCGCT TGCGCTCTGG 
TCGTTGTGGC CAACGTATCA GGATTATTCC TATTCAAAGC AGCTCGATCG GCAGGAGACT 
GCCGAAGACA GCCTTTCCTT TGTTCGAGAC CATCGTGAGT CGATTGAAGC CGCGGCTGAA 
AAAAGTCTGA AACTCGGACT GGACCTGAGG GGAGGCATGT ATCTTGTCCT TGAAGTTGAT 
CTTATCGATC TTATTGAAGA GAAGGCATGG AACAAAGATG ATACCTTCCG CCGGATCATT 
GCCGATGTCA GGAGCAAAAC CGCCGGCAGC AACGCTCAGG TGATCGAGGT GCTGGTTTCT 
GAATTTCAGA AGCGCAGCAT AAGGATGAGC CGTTACTTTT ATGAGGTGCG GGACAGTGAC 
GAGGAAATAA TCGTCAAGCT CAGAAAAGAG GCGCAGGACG CCGTCGTCAG AGCAAAGGAG 
ATTATCCGGA ACCGGGTTGA CCAGTATGGC GTTGCCGAGC CGGTGATTCA GAGCCAGGGA 
GCAAGACGTA TCATTGTCGC CCTTCCCGGT GTTTCCGACG AAGACAGGGT TCGCAAACTG 
CTTCGTGGGT CTGCGAAACT GGAATTCAAG CTTGTCAAAG ATAATGAAAG TCTGCTCGAA 
GCTCTCGAGC GGATTAACAG TTCACTGGCT GAGAACGAGG TGTCGAAAGA GAATCCGGAC 
CTTCCTGAAG GAGATGGCGC GGAAGGAGAG ACCGTAGCCG AGAAGTCGAG CAATCCTCTG 
TATGATAACA TCGTTGTTCT TGAAAACGGA AGAGTCTATG CTCCGGACTA TTCGAGAGAG 
TACCTGACCG GTCTCTTTCA ACGTGAAAGT ATTCAAAAGC TGCTCCCGAA AGATTCGGAA 
ATCCGTCTGT CGGCAAGGTC GATCGAGGGG AGTGACGGTG CTATGTTTTA CGATGTCTAT 
CTGCTGAAGA AAACTCCTGA GCTTACCGGA GGGGTTATTA CTGAAGCTAA GGCAACCTTT 
GGCGCTTCAG CCGTTCAGCC GGAAGTCACC ATGAAAATGA ATTCTGACGG TACGGCTAAA 
TGGGCGAGAA TCACCGGTGC GAATATCGGC CGCAGGATTG CTATCGTTCT GGACGGCGCA 
GTGTATTCTG CGCCTGTGGT TGAGTCAAAA ATTCCCGGCG GGAGTTCCGT GATCAACGGT 
ATTGATGGTA TCGAAGAGGC TCAGGATCTT GAGATCGTGC TGAAAGCAGG CGCGTTACCT 
GCGCCCGTAA GAATTATTGA AGAACGGACA GTCGGTCCGA CGCTTGGTGC TGATTATATC 
CGTTCGGGCC TGCTTTCAGC AGCCTGGGGC CTGTTTCTTG TCGCCGTATT CATGGTGTTC 
TACTACCGTA AGGCAGGATT TTCCACAGAC ATCGCGCTTG TCCTGAATAT TCTTTTTGTG 
CTCTCTGTGC TCGCCGGATT CAGTGCGGCA CTCAGTCTGC CGGGTATTGC CGGTATCGTG 
CTGACCATCG GTATGGCTGT AGATGCAAAT GTGCTTATTT TTGAACGGAT CAGGGAGGAG 
ATCGCTCAGG GAAAAAACAT GCGTCTTGCG GTTGATACCG GATACAGCAA GGCATTTTCT 
GCTATTGTTG ACTCTCAGAT TACAACACTT GGCGCCGGAT TCCTGCTCTA TATCTATGGC 
ATTGGGCCGA TCCAGGGATT TGCGCTCACG CTCATGATAG GTATTGCGGC CAGTCTTTTC 
ACCGCTCTGG TGGTTACCAA GGTTATTTTT GATCTGCTGA TTGATCGAAA TCTCATGACA 
GCAAAGAGTT TCGGATAA 

 

Protein sequence

MKNNRFKSIL IVALTALALW SLWPTYQDYS YSKQLDRQET AEDSLSFVRD HRESIEAAAE 
KSLKLGLDLR GGMYLVLEVD LIDLIEEKAW NKDDTFRRII ADVRSKTAGS NAQVIEVLVS 
EFQKRSIRMS RYFYEVRDSD EEIIVKLRKE AQDAVVRAKE IIRNRVDQYG VAEPVIQSQG 
ARRIIVALPG VSDEDRVRKL LRGSAKLEFK LVKDNESLLE ALERINSSLA ENEVSKENPD 
LPEGDGAEGE TVAEKSSNPL YDNIVVLENG RVYAPDYSRE YLTGLFQRES IQKLLPKDSE 
IRLSARSIEG SDGAMFYDVY LLKKTPELTG GVITEAKATF GASAVQPEVT MKMNSDGTAK 
WARITGANIG RRIAIVLDGA VYSAPVVESK IPGGSSVING IDGIEEAQDL EIVLKAGALP 
APVRIIEERT VGPTLGADYI RSGLLSAAWG LFLVAVFMVF YYRKAGFSTD IALVLNILFV 
LSVLAGFSAA LSLPGIAGIV LTIGMAVDAN VLIFERIREE IAQGKNMRLA VDTGYSKAFS 
AIVDSQITTL GAGFLLYIYG IGPIQGFALT LMIGIAASLF TALVVTKVIF DLLIDRNLMT 
AKSFG