Gene Aasi_0170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAasi_0170 
Symbol 
ID6376618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Amoebophilus asiaticus 5a2 
KingdomBacteria 
Replicon accessionNC_010830 
Strand- 
Start bp196458 
End bp197447 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content35% 
IMG OID642681359 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001957344 
Protein GI189501627 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.487906 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCAA TAGCCTTTCA AATACCTGGT AAAATCTCTG TAAAACAAGC AGACGAGTTT 
CATGGTATAT TTACTTTTAA GCCACTTGAA AGAGGTTATG GCGTAACCAT TGGTAATGCT 
TTGAGAAGAG TGATACTATC CTCACTAGAA GGATATGCTA TCACCTCTAT CAGAATACCG 
GGCATATATC ACGAGTTTTC TACTATAGAG GGGGTAACAG AAGATTTAGT AGAAATTATT 
TTAAACCTTA AGCAGATTAG GTTTAAAAAA ATTGGAGATA CTACAGAAAA TAAAATATTT 
ATTTCAATCA ACAATAAAAA AATTCTGACA GCAGGAGATT TTGCACAGGC AACTGCTGCG 
TTTGAAATAA CTAACCCAGA ATTAGTTATT TGCCATATAG ATGAGTCAGC CAGATTCGAA 
ATAGAAGTTA CTGTTGAAAA AGGACGTGGC TACGTACCTG CAGAAGAAAA TAAAATTGAT 
GCACAGGTAA AAGGTGTTAT TCCAATCGAT TCTATTTTTA CTCCTGTAAA AAATGTTAAA 
TACCATGTTG AGAACACTCG TGTTGGTCAA AAAACAGATT ATGAATCTCT AGTATTCTCT 
GTAGAAACTG ATGGTACTAT TCACCCTCAA ACTGCTATTG AGCGTGCTGC TGACATTATG 
ATCAAGCATT TTGCTCTACT CATTGATAGA AACAAGATGG TAGAGACTAA GGATGCTGAT 
GAGATAGATG TCTTGGATGA GTCTACGCTA CAAATGCGTA AATTACTTAA AACTCCTCTT 
AGCGAAATGG GACTATCTGT TAGAGCCTTT AACTGTCTTA AAGCAGCTGA CATAAAAACT 
TTAGGAGATT TAGTGCAATT GAAGGTGTCT GATATGGCCC AATTTAGAAA TTTTGGTAAA 
AAGTCTCTTA AAGAGTTACA AGACTTAGTA GCTAGTAAAG ATTTAACTTT TGGTATGGAT 
CTATCAGCTT ATAATCTAAA TGACCAATAA
 
Protein sequence
MSSIAFQIPG KISVKQADEF HGIFTFKPLE RGYGVTIGNA LRRVILSSLE GYAITSIRIP 
GIYHEFSTIE GVTEDLVEII LNLKQIRFKK IGDTTENKIF ISINNKKILT AGDFAQATAA 
FEITNPELVI CHIDESARFE IEVTVEKGRG YVPAEENKID AQVKGVIPID SIFTPVKNVK 
YHVENTRVGQ KTDYESLVFS VETDGTIHPQ TAIERAADIM IKHFALLIDR NKMVETKDAD 
EIDVLDESTL QMRKLLKTPL SEMGLSVRAF NCLKAADIKT LGDLVQLKVS DMAQFRNFGK 
KSLKELQDLV ASKDLTFGMD LSAYNLNDQ