Gene BLD_1917 details

Gene Information

• Locus tag: BLD_1917
• Symbol: vsr
• ID: 6363139
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: +
• Start bp: 2282844
• End bp: 2283278
• Gene Length: 435 bp
• Protein Length: 144 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 642681125
• Product: Very short patch repair (Vsr) endonuclease
• Protein accession: YP_001955860
• Protein GI: 189440779
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3727] DNA G:T-mismatch repair endonuclease
• TIGRFAM ID: [TIGR00632] DNA mismatch endonuclease Vsr

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.715559
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAGAAGT ATGAGCGGGG TACCCGTTCG TACACGATGT CGCATATTCG TGGCAAAGAC 
ACCAAAATTG AGGTACTGGT ACGCAGCTAC CTGTTTCGCA AGGGGTTGCG ATTCCGCAAG 
AACGACAAGC GTTACCCCGG ACACCCGGAT GTAGTACTGC CGAAATACCA CGCCATCGTG 
TTTGTCAACG GCTGTTTCTG GCACATGCAT GAAGGATGTT CCAAACATTC GATGCCGAAA 
TCGAACGTGG AATTCTGGCA GGCGAAACTA CTGCGCAATC ACAATCGAGA CATCGCGCAG 
CGAGCCGAAC TGGAGGCCGC TGGCTGGCGT GTAATTACCG TATGGGAGTG CGAATTAACG 
AAAGCCGTGC GCGACGAACG CCTCGTACGG CTGTATGAGC AGATTGTTGA AGGAGATGCA 
GATTCAGCGG AATAA 

 

Protein sequence

MEKYERGTRS YTMSHIRGKD TKIEVLVRSY LFRKGLRFRK NDKRYPGHPD VVLPKYHAIV 
FVNGCFWHMH EGCSKHSMPK SNVEFWQAKL LRNHNRDIAQ RAELEAAGWR VITVWECELT 
KAVRDERLVR LYEQIVEGDA DSAE