| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1845 |
|---|
| Symbol | dacB |
|---|
| ID | 6364038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 2198417 |
|---|
| End bp | 2199907 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642681051 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase |
|---|
| Protein accession | YP_001955788 |
|---|
| Protein GI | 189440707 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTATCTA CAGCGGTATC ACGCCGTCGG CGACGTGAAG CGCAACGGCG GACCCAACGA
TCGCATCGCC GAACACTGAC CGTCATCATT TCCGCACTGA CCACCATCGC CCTGTTCGCG
GGGTACTGCG CCGCCGACAT CACCGACGTG GCCCCCGGAT TGTTGACGTT GAAACCTGTC
ACCGCACCTG TTTTCGCCAA TCCGGCCACC GCCAAATCAG GCGGCACCAT CGCCGGTGCC
CTGAACGCGA ACAAGGCCAT TGATTCCACG GCCGCTTCTG CACTGGTCAA CGAATTGCTG
TCCGCGCAAG GCGTGGGAAA CGATACGTCG GTGATCATTG AAGACGCCCA AGGCACCGTC
GCCGCCGAAC ACGAGTCGAA CACTCCACGC GAGCCTGCAT CCACACTGAA AACGCTGACC
GCGCTCGCCG CCTCATCCAC CCTGAACATG GCATCCACCT TGGATACCCA AGTGTTCCTG
ACCCAATCCG ATGACGGCAC CAATACGTTG ACCCTCAAAG GCAATGGCGA CATGCTGCTG
TCTGCAGGCG ATTCCGACGC CAACCATACC AACGGACGTG CCGGTCTGAA CACCTTGGCC
AAGGCCACTG TGGCCGCGCT CGCCCAGCGA GGCATCACTT CCGTCAATCT CGAGTACGAC
GACACCCTAT TCGGCGACTC ACGCATTCCC GCAGGTCTGT CGGAAGGCGG CGCGGTCTTA
AGCGACTACA CCGTCTACTT CACGCCGGTC TCATCAATGG CGATTGATGG AGGCCGCCAA
TACACCGCCG ATACGCCTGC GCCGGCCGAC CCTGATGATT CGGCCGGATA CCCGGAACTG
TCCCAGCACA CCGCCAGCGA CGTGGCCACG AAATTCGCCG AACTGCTCCA ATCGAACGGT
GTGGCCGTTA CCGGAGACGT GACGGCAAAC ACCGCTCCAT CCGGCGAAAC GCCTTTGGCC
TCGGTGAGTT CGGCAACACT GTCCGAAATC ATGGCATACA CGTTGCGGCA TTCGGACAAT
ACGCTGGCCG AGGAGTTCGG TAGACTCACC GCCTTGGCGA AATCAGCGAC AAACAGTCCT
GAAGGCGGCA CGGAAGCGGT CAAATCCACT CTGAACGATC TCGGTCTCGA CACATCCGGT
CTGACCATGG CCGATTGCTC CGGCCTGTCT CCCGGCTCCC GGCTCATCGT ACGCACGCTG
GCGGCCGTCC AACAACGTAA TCTGACCACC GAGAGCGGTG CTGCTGGTGC GGAAGGTCTA
TCCATCGCGG GGTTGGTGGG CACGGCGCAG GATCGGTATA CGGATGATGC CGTGGCCGGT
CTGCTGCGCG TCAAAACCGG CAGCCTCGGC ACGGTCACGT CGATGGCCGG CAATGTGTCC
CGTACCAATG GGGGAGCGTT GTCGTTTGCC GTGGTGGTCA ACAATCCTGA GGATTATGCC
GCCGCGCGTA GCGCCATCGA CTCGTTCATC ACCAAGCTCG CGGGGCTGTA A
|
|---|
| Protein sequence | MVSTAVSRRR RREAQRRTQR SHRRTLTVII SALTTIALFA GYCAADITDV APGLLTLKPV
TAPVFANPAT AKSGGTIAGA LNANKAIDST AASALVNELL SAQGVGNDTS VIIEDAQGTV
AAEHESNTPR EPASTLKTLT ALAASSTLNM ASTLDTQVFL TQSDDGTNTL TLKGNGDMLL
SAGDSDANHT NGRAGLNTLA KATVAALAQR GITSVNLEYD DTLFGDSRIP AGLSEGGAVL
SDYTVYFTPV SSMAIDGGRQ YTADTPAPAD PDDSAGYPEL SQHTASDVAT KFAELLQSNG
VAVTGDVTAN TAPSGETPLA SVSSATLSEI MAYTLRHSDN TLAEEFGRLT ALAKSATNSP
EGGTEAVKST LNDLGLDTSG LTMADCSGLS PGSRLIVRTL AAVQQRNLTT ESGAAGAEGL
SIAGLVGTAQ DRYTDDAVAG LLRVKTGSLG TVTSMAGNVS RTNGGALSFA VVVNNPEDYA
AARSAIDSFI TKLAGL
|
|---|
| |