| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1724 |
|---|
| Symbol | rpsE |
|---|
| ID | 6363808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 2062012 |
|---|
| End bp | 2062743 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642680924 |
|---|
| Product | 30S ribosomal protein S5 |
|---|
| Protein accession | YP_001955667 |
|---|
| Protein GI | 189440586 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0098] Ribosomal protein S5 |
|---|
| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00276041 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACA ACGAAACGAA GGAAACCCAA GTGGCTGAAG AAACTCAGAA CACTGTGGCG
ACCGAATCCA ACAACGAGGA CCGCAAGGGT CGTCGTGGCC AGCGCGGTGA AGGCCGTCGT
GGCGAGCGTC GTAACCGTCG TGAAGAAAAC CACGGCGACG AGCTGCTCGA TCGCGTGGTG
ACCATCAACC GTGTGTCCAA GACCCACAAG GGTGGCCGTA CCTTCAGCTT CGCCGCACTG
GTTGTGGTCG GCGACGGCAA CGGCACCGTG GGTGTCGGCT ACGGCAAGTC CCGTGAAGTC
CCGGCCGCCA TCGCCAAGGG CCAGCTGGAC GCCAAGAAGC ACATGTTCTC TGTGCCTCGC
GTCCGCGGCA CCATCACCCA CCCGGTTCAG GGTCACGACG CTGCTGGCAC CGTCCTGCTG
CGTCCGGCCG CCCCGGGTAC CGGTGTAATC GCCGGTGGCT CCGTGCGCGC CGTCATGGAA
TGCGCAGGCA TCACCGACGT CCTGACCAAG TCGATGGGCT CCGCCACCGC CGTTAACGTG
GTGCGCGCTA CCGTCGACGC CCTCAAGCAG CTCGAAGAGC CCGAGGAGAT CGCCGCCCGT
CGTGGCCTGG CGCTCGACGA GGTCGCTCCC GATGCTCTGC TGCGCGCCCG CGCCGCCGGC
ATTGCCGAGG CTCGCAAGGC TCGCGAAGAG GCTGCTGCCG CTAAGGCCGC CGAAGAGAAG
GATGGTGAGT GA
|
|---|
| Protein sequence | MSDNETKETQ VAEETQNTVA TESNNEDRKG RRGQRGEGRR GERRNRREEN HGDELLDRVV
TINRVSKTHK GGRTFSFAAL VVVGDGNGTV GVGYGKSREV PAAIAKGQLD AKKHMFSVPR
VRGTITHPVQ GHDAAGTVLL RPAAPGTGVI AGGSVRAVME CAGITDVLTK SMGSATAVNV
VRATVDALKQ LEEPEEIAAR RGLALDEVAP DALLRARAAG IAEARKAREE AAAAKAAEEK
DGE
|
|---|
| |