| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1713 |
|---|
| Symbol | rpsC |
|---|
| ID | 6364142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 2057298 |
|---|
| End bp | 2058101 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642680913 |
|---|
| Product | 30S ribosomal protein S3 |
|---|
| Protein accession | YP_001955656 |
|---|
| Protein GI | 189440575 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0092] Ribosomal protein S3 |
|---|
| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.295513 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCAGA AGATCAATCC GTTTGGCTAC CGTCTGGGCA TCACTGAGAA CCACCGCTCC
AAGTGGTTCT CCGACTCCAA CAAGGCCGGC GAACGCTACC GCGACTTCGT GCTTGAGGAT
GATCAGATCC GCAAGGAGAT GAGCAAGGAC CTCGAGCGCG CTGGCGTGTC CCGCATCGTC
ATCGAGCGCA CCCGCGACCG CGTTCGCGTC GACATTCACA CCGCCCGTCC GGGCATCGTG
ATCGGTCGTC GTGGCGCCGA GGCTGAGCGC GTCCGCGCCA AGCTCGAGAA GCTGACCGGC
AAGCAGGTCC AGCTCAACAT CTTCGAAGTC AAGAACGCCG CGCTGGACGC CCAGCTCGTC
GCTCAGGGCA TCGCTGAGCA GCTGACCAAC CGCGTCACCT TCCGTCGTGC CATGCGTAAG
GCCCAGCAGG ACGCCATGCG CGCCGGTGCC AAGGGTATCC GCATCAAGCT CTCCGGCCGC
CTCGGCGGTG CGGAAATGAG CCGTTCCGAG TTCTACCGTG AGGGCCGCGT TCCGCTGCAG
ACCCTCCGCG CCCTCATCGA TTACGGCTTC TTCGAGGCCA AGACCACGTA CGGCCGTATC
GGCGTCAAGG TCTGGATCTA CAAGGGCGAC ATGACCGAAT CCGAGTTCGA AGAGCAGCAG
GCTCAGCAGA ACAACCGTCC GGGCCGTCGT GGTGGCGATC GCCGCCCGCG CCGTGGCAAC
CGTTCCGCCG CCCCGCAGGC CGCCGAAGCC CCCAAGGCTG AGGCTCCCGC CGAGGCCGCT
CCGGCTGCAG AAACGAAGGA GTGA
|
|---|
| Protein sequence | MGQKINPFGY RLGITENHRS KWFSDSNKAG ERYRDFVLED DQIRKEMSKD LERAGVSRIV
IERTRDRVRV DIHTARPGIV IGRRGAEAER VRAKLEKLTG KQVQLNIFEV KNAALDAQLV
AQGIAEQLTN RVTFRRAMRK AQQDAMRAGA KGIRIKLSGR LGGAEMSRSE FYREGRVPLQ
TLRALIDYGF FEAKTTYGRI GVKVWIYKGD MTESEFEEQQ AQQNNRPGRR GGDRRPRRGN
RSAAPQAAEA PKAEAPAEAA PAAETKE
|
|---|
| |