Gene BLD_1707 details

Gene Information

• Locus tag: BLD_1707
• Symbol: rplC
• ID: 6364325
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: +
• Start bp: 2054152
• End bp: 2054793
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 642680907
• Product: 50S ribosomal protein L3
• Protein accession: YP_001955650
• Protein GI: 189440569
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00287886
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTAATC GCAAGGCTCT GCTGGGCAAG AAGCTCGGCA TGTCCCAGGT GTGGGACGAG 
AACGGCTTCT TCGTGCCCGT CACTCTTGTC GACGTGTCCA CCAACGTGGT GACCGCCGTG 
AAGACCGAGG AATCTGACGG CTACAAGGCT GTCCAGCTCG GCTACGGCGC CATCGATCCC 
ACCAAGGTGA CCAAGCCGCT GGCTGGCCAC TTTGCCAAGG CCGGTGTCAC CCCGCGTCGC 
CACCTCGTCG AGGTGCGCAC CGACGACGTC GATCAGTTCG AGGCCGGCCA GGAACTGGCC 
GCTGACCTGT TCGAAGAGGG TGCTGAGGTC GACGTGACCG GCACCACCAA GGGTAAGGGC 
TTCGCCGGTA CCATCAAGCG TTGGGGCTTC AAGTCCTACC GCCGTACTCA CGGTTCTCAC 
AAGAACGAGC GCCGTCCCGG TTCTGTGGGC GCATGCGCCA CTCCGAGCCG TATTCTCAAG 
GGCAAGCGTA TGGCCGGCCG CATGGGTCAT GTGACCGCCA CTACCCAGAA CCTGACCGTC 
GTCTCCGCTG ATGTCGAGAA CGGCATCCTC GCCATCAAGG GCGCCATTCC TGGCCCCAAG 
GGCGGCATCG TTCTCGTCCG CTCGGCTGTG AAGGGAGCCT GA 

 

Protein sequence

MSNRKALLGK KLGMSQVWDE NGFFVPVTLV DVSTNVVTAV KTEESDGYKA VQLGYGAIDP 
TKVTKPLAGH FAKAGVTPRR HLVEVRTDDV DQFEAGQELA ADLFEEGAEV DVTGTTKGKG 
FAGTIKRWGF KSYRRTHGSH KNERRPGSVG ACATPSRILK GKRMAGRMGH VTATTQNLTV 
VSADVENGIL AIKGAIPGPK GGIVLVRSAV KGA