| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1615 |
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| Symbol | cafA |
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| ID | 6364084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 1930475 |
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| End bp | 1933543 |
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| Gene Length | 3069 bp |
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| Protein Length | 1022 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642680806 |
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| Product | ribonuclese G and E |
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| Protein accession | YP_001955558 |
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| Protein GI | 189440477 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCGCG CCGCGAGGAG CATTGTGCCC ACTGACAACC GTGAAGGTTT CGTCAACGAC
GGAACCGATA ATTCAACCGC ATCCAATGCC GATTCGGCTG CAGCCGTGAA CGCTGCGCCT
GCCGCCGCCT CCCAGCCCGT CGAACCTGTT CGCCGTCGTC GTGGCGGCCG CCGTGTAGTC
CGTGGCACCG GTGCCGCCGG CGCTTCCCTG GAACTGCAAG TGCAGGAACG CACCCCGCTG
TTCGAAGCCC CCGCGCTTCC CGATGCCAGC ACCGCGGCCG ATTCCAAGTC ATCCGATTCC
AGCGATTCCG ATGAATCCAG CGATTCCCAG GATTCCGCCG AACGTCCAAC CCGCCGCCGT
TCGCGCCGCG CCGCTTCCGC AGTGGCCGAC TCGGATAGCG AGGATGATCG TCCTCGTCGT
TCGCGCCGCA CTGTCAGTGC CGATGATTTC GATGACGATG ACGCCCCACG TTCCCGCCGC
CGTTCGGTTG TGGACGATGA CGATTACGAC GAGGACCGCC CGGTTCGCCG CCGCTCTCGC
TCCCGCCAGT CCGACGATGA TGACTACGAG GATCGGCCGG TTCGCTCCCG CTCTCGCCGT
GCGTCTATGG ATATGGATGA TGATGACGAG GACCGTCCGG TTCGCCGTCG TTCTCGCCGT
GCAGTTGCGG ATACGCACGA GGACACCCCG GATGAGCGCC TGTTCGACGC GGTCGAATCC
CTGCCCTCTG GCCACGAGGC CGTGCGTCGC GGCAAGCCGA TGACGTCCCT GCTCTTCCAG
GAACCGGTAC TGCCCGCCGC TGTGGATGCG CACGATACCG CTGACACTCG TGATGACGAT
GTTGACGACG ACGAACGTCC GTCGCGTCGC TCCCGCCGCT CGCGCAGCCA CGATGATGAC
GACGCGCAGC CGCGCAGCCG CCGCCGTGAC GACCGTGACG ATCGTGGCCG CAATGCCGCC
GACCGTGATG CGTCTCGTGA CGCTTCCCGC AACGCTGCCG CCGGTGACGC CAATGCCAGC
GCCAACACGG ACCATGATGA TTTCGATTCC GATGACGCTT CCGACTCTCG CCGTTCCCGT
CGCTCCCGCC GCCTGAACGC CCAGGAGCGC CGTGCAGCCG CCGAAGTCGA GCAGATTGAG
GAAGACCTCG AGCTGGACGA TATCGCCTAC TCGCCGATTG CCGAAGAGGA GGGCGACGAA
GAATCCGACG CCACCCGCAC CCGTTCGCGC CGTCGCCGCC GTCGCGGCTC ACGCGGCGAA
ACCGGTGCCA ACGGCGAGCA CGATACCGCC GAGAACGATG CCGAAGATAC GCGTTCCCGC
CGTCGTGACG ATCGCGATGA TCATGACCGT GATCGCGATG AGGACGATGA GGAGCAGACC
GTTACTCGCC GTCGCCGTCG CCGTCGTGGC GGCAAGAACG GCGAGGGCAC CGACGACCAG
AGTCAGAACA GCGAACAGCC GCTGGTCCGC CGCTCCCGCA AGCAGCAGTA CATCGACGAG
ATCACTGATG TGGAGGGCTC CACTCGTCTC GAGGCCAAGA AGCAGCGCCG CCGTGACAAC
CGCCGTGAGC GCAGCCGCCA GAGCCAGCTC ATGGAACAGG ACTTCCTCGC ACGCCGCGAG
AACGTGGACC GCCTGATGGT GGTGCGTGAG AAGGAACATC ACACCCAGAT TTCCGTGGTG
GAAGACAATG TTCTGGTCGA GCATTACGTC TCCGACATCC AGGAAGTACA GACCGTCGGC
AACATCTACC TTGGCCGCGT GCAGAACGTG CTGCCCAGCA TGGAGGCCGC ATTTGTGGAC
ATCGGCCAGG CCCGCAACGG CGTGCTCTAC GCCGGCGAGG TCAACTGGGA TGCCGCTCGT
CTCGAAGGCC AGCCGCGCCG CATCGAGCTG GCGTTCAAGT CCGGCGACCC GGTGCTCGTG
CAGGTCACTA AGGACCCGAT CGGCCACAAG GGTGCCCGCC TGACCTCTCA GGTCACGCTC
GCCGGCCGCT TCCTGGTGCT CGTGCCATCC GGCGGCATGA CCGGCGTGAG CCGCAAGCTT
TCGGAGCGCG AACGCAGCCG TCTGAAGAAC ATCGTCTCCA AGATCGCCCC GAAAGACATG
GGCGTGATCA TCCGTACCGC AGCCGAGGGC GCATCCGAAG ACGCCATCGT CAAGGATCTC
GAATCACTGG TCCGCCAGTG GGAGCGCATC AACGCCAAGC GCGAGGAATT CTGGCACGGC
AAGCGCCCGA AGCTCCTGCA GGGCGAGCCC GACGTGGCCA TCCGCGTGGT GCGCGACATC
TTCAACGACG ACTTCAGCAA GCTCATCGTG GAAGGTGACA AGGTCTACGA CCGTATCGAG
GAATACCTTG ACACCATGGC CCCCGACTTG AAGGACAAGC TGGAGAAGTG GGACCCGGCC
GAGCATGAAG GCAAGGACGT GTTCGACAAG TGGTCCATCG ACTCCCAGCT GCGTAAGGGC
ATGGAGCGTC AGGTCTACCT GCCGTCCGGC GGCTCGATTG TCATCGATCG CACCGAAGCC
ATGACCACCA TTGACGTGAA CACCGGCCGC TTTATCGGCA AGGGCAAGTC CTTGGAAGAA
ACGGTGACGC GTTGCAACCT GGAGGCGTCT GAAGAGATCG CCCGCCAGCT GCGCCTGCGC
GATATCGGTG GCATGGTGAT GATCGACTAC GTGGATATGG TCATGCCCGC CAACCGCGAT
CTGGTGCTGC GCCGCTTGGT CGAATGCTTG GCACGCGACC GCACCAAGCA TCAGGTGGCC
GAAGTCACCT CGCTTGGTTT GGTGCAGATG ACCCGCAAGC GCATCGGCCA GGGTCTGGTC
GAGGCGTTCT CCGAGGAATG CCCGACCTGC AAGGGCCGTG GTTTCATCCT GCATGATCAG
CCGACCGTTT CGGCCGACTA CGACGATCCC TACGCGCTTC GCGGTGGCGA CCCGTTCGTC
AAAACCAACA AGCACGGTCG CGGCACCGCT CCCGCTCCCG AACCGGCTGG TTCCAGCGCC
GACGTCAAAG CCAAACTGGC TCAGATTGCC GCCGCTGCCG TCGCTGCCAA CAACACGGCG
GAAGAGTAA
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| Protein sequence | MQRAARSIVP TDNREGFVND GTDNSTASNA DSAAAVNAAP AAASQPVEPV RRRRGGRRVV
RGTGAAGASL ELQVQERTPL FEAPALPDAS TAADSKSSDS SDSDESSDSQ DSAERPTRRR
SRRAASAVAD SDSEDDRPRR SRRTVSADDF DDDDAPRSRR RSVVDDDDYD EDRPVRRRSR
SRQSDDDDYE DRPVRSRSRR ASMDMDDDDE DRPVRRRSRR AVADTHEDTP DERLFDAVES
LPSGHEAVRR GKPMTSLLFQ EPVLPAAVDA HDTADTRDDD VDDDERPSRR SRRSRSHDDD
DAQPRSRRRD DRDDRGRNAA DRDASRDASR NAAAGDANAS ANTDHDDFDS DDASDSRRSR
RSRRLNAQER RAAAEVEQIE EDLELDDIAY SPIAEEEGDE ESDATRTRSR RRRRRGSRGE
TGANGEHDTA ENDAEDTRSR RRDDRDDHDR DRDEDDEEQT VTRRRRRRRG GKNGEGTDDQ
SQNSEQPLVR RSRKQQYIDE ITDVEGSTRL EAKKQRRRDN RRERSRQSQL MEQDFLARRE
NVDRLMVVRE KEHHTQISVV EDNVLVEHYV SDIQEVQTVG NIYLGRVQNV LPSMEAAFVD
IGQARNGVLY AGEVNWDAAR LEGQPRRIEL AFKSGDPVLV QVTKDPIGHK GARLTSQVTL
AGRFLVLVPS GGMTGVSRKL SERERSRLKN IVSKIAPKDM GVIIRTAAEG ASEDAIVKDL
ESLVRQWERI NAKREEFWHG KRPKLLQGEP DVAIRVVRDI FNDDFSKLIV EGDKVYDRIE
EYLDTMAPDL KDKLEKWDPA EHEGKDVFDK WSIDSQLRKG MERQVYLPSG GSIVIDRTEA
MTTIDVNTGR FIGKGKSLEE TVTRCNLEAS EEIARQLRLR DIGGMVMIDY VDMVMPANRD
LVLRRLVECL ARDRTKHQVA EVTSLGLVQM TRKRIGQGLV EAFSEECPTC KGRGFILHDQ
PTVSADYDDP YALRGGDPFV KTNKHGRGTA PAPEPAGSSA DVKAKLAQIA AAAVAANNTA
EE
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