| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1569 |
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| Symbol | rfbC |
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| ID | 6363342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 1867579 |
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| End bp | 1869030 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642680760 |
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| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
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| Protein accession | YP_001955512 |
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| Protein GI | 189440431 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase
[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
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| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase
[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATTTG AATTCGAGAA GGAACTGAAG GTCGAGAAGA CGAACATCCC GGGCCTTCTG
GTGTTCGACC TGCCGGTGCA TGGCGACAAC CGTGGCTGGT TCAAGGAGAA CTGGCAGCGC
GCCAAGATGA TGGGTCTGGG ACTGCCGGAC TTCGGCCCGG TGCAGAACAA CATCAGCTAC
AACGCGACCA AGGGCGTCAC CCGTGGCATC CACGCGGAGC CGTGGGACAA GTACATCAGC
ATCGCTGCCG GCGAGATCTT CGGCGCGTGG GTTGACCTGC GCCCGGGCGA GAGCTTCGGC
CAGGTGTACA CGACCCGTTT GGATCCGTCC AAGGCAATCT ACGTGCCTCG CGGCGTGGGC
AACAGCTTCC AGGCGCTGCA GGACGGCACG GTGTACACGT ATCTGGTGAA CGCGCACTGG
TCGCTCGAGC AGAAGAAGAC CTACACGTTC GTGAACCTTG CGGATCCGGA ACTGAACATC
CAGTGGCCGA TTCCGCTGGA GGAGTCCGAG CGCTCCGAGG CCGATCTGCA CCACCCGATG
CTCAAGGACG CCAAGCCCAT GGCTCCCAAG CGCACCCTGG TGACGGGCTG CAACGGCCAG
CTGGGCCACG CGATTCGCGC CTACGCGGAA GCGCATGGTC TGGAGGGCTT CGAGTACACG
GACATCGACG AGTTCGACTT CTCCGACCCG AAGGCATACG AGGCATACGA TTGGAGCCTG
TACGGCACGA TCATCAACGC CGGTGCCTAC ACGGCCGTCG ACAAGGCCGA GACCGCCGAA
GGCCGTCCGA TCGCGTGGAA GGCGAACGCC CAGGGTCCGG CTCTGCTGGC CAAGGTGGCC
AAGGACCACC ACATCACCCT CGTGCACGTG AGTTCGGATT ATGTGTTCGA CGGCACCGCC
AAGGAACACA CGGAGACGGA GGCGTTCGCC CCGCTCGGTG TGTACGGCCA GACCAAGGCC
GCTGGCGACA TCGCCGTGGC CAACGCACCC GAGCATTACA TCCTGCGTTC CAGCTGGGTG
ATCGGCGAGG GGCACAACTT CGTGAAGACC ATGATGATGC TGTCCAACAA GGTCGCCGAC
CCGGCCGACA AGCTGGAACA GGTCACCGTG GTGGATGACC AGTACGGTCG CCTGACCTTC
ACCCGCGACA TGGCCGAGGC GATCTTCCAC CTGCTTGACA GCCATGCCCC CTACGGCACC
TACAACTTGA CCGGTTCCGG CGCAGTGAAG TCCTGGGCTG ACATCGCGGC CGAGGTGTTC
GACCTGACGA ACGGCAACGG CAGCAAGGTC AAGCCCATCA GCACTGCCGA GTACTTCGCG
AACGCGACCA ACCCGGTATC TCCGCGTCCG GTCAACTCCG CACTGGATCT TGCTAAGATC
GGTGAAGCCG GATACGTGCC CGCTGACTGG GAAGAGACCC TCAAGACCTA CGTGCAGAAG
GAACTCGGCT GA
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| Protein sequence | MAFEFEKELK VEKTNIPGLL VFDLPVHGDN RGWFKENWQR AKMMGLGLPD FGPVQNNISY
NATKGVTRGI HAEPWDKYIS IAAGEIFGAW VDLRPGESFG QVYTTRLDPS KAIYVPRGVG
NSFQALQDGT VYTYLVNAHW SLEQKKTYTF VNLADPELNI QWPIPLEESE RSEADLHHPM
LKDAKPMAPK RTLVTGCNGQ LGHAIRAYAE AHGLEGFEYT DIDEFDFSDP KAYEAYDWSL
YGTIINAGAY TAVDKAETAE GRPIAWKANA QGPALLAKVA KDHHITLVHV SSDYVFDGTA
KEHTETEAFA PLGVYGQTKA AGDIAVANAP EHYILRSSWV IGEGHNFVKT MMMLSNKVAD
PADKLEQVTV VDDQYGRLTF TRDMAEAIFH LLDSHAPYGT YNLTGSGAVK SWADIAAEVF
DLTNGNGSKV KPISTAEYFA NATNPVSPRP VNSALDLAKI GEAGYVPADW EETLKTYVQK
ELG
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