| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1558 |
|---|
| Symbol | |
|---|
| ID | 6364293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 1853524 |
|---|
| End bp | 1854930 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642680749 |
|---|
| Product | SalY-type ABC antimicrobial peptide transport system permease component |
|---|
| Protein accession | YP_001955501 |
|---|
| Protein GI | 189440420 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.457306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGTCC TCAGCAACGC CTGGCGGGCC CTGACACGTT CTAAAGGACG TACGGCCCTG
ACCGCGTTCA TCACCTTGGC GGTCACCTTC GGCACAGTCG CCGGACTGGC CATCATTCAA
GAAGATACCA ACGCACACAC CACCACGTAC GATCAGCAGA AGGCCACGTT GGCCATTCGC
CCGACTGCGG CTACGTGGAA GAAGGTCTCC GCTACGGACT CGGCTTCCAC CAAGCATTAC
ATGACGTGGA CCTCATACAC CGAATACGCC ACGCTCGTCC AGTCGGCCAC CAACTCGTTG
AACTTCACGG TTACCGAAAC CGTGCCGGCC CGCGTGAGCG GTGATTTGAA GGCCCTGGAC
GGCGGATCGC TGGGCTCGGC CTCCGATGAT GAGACCGGCG GCCAGCTCAT TTGGCGAGCC
TTCTGGACCG AGGATGCCGC CAAGGCCAGC GACCTCGGTA CCTTCGAAAT CGTGGACGGC
AAGGACCTGA GCTACAACAA CCAGTCCTCC AACCCGAACA CCACCGGCGC ACTGGTCTCT
GAAGCGTTTG CCTCCGCCAA CAACCTGAAG GTGGGCGATA CGCTCAAGGT GGCGGCCGCC
TCGGACGCCC AGACCACGGC CGAGCTCAAG GTGCGCGGCA TCTACAAGTA CACATCCGAA
TCCGCCGTCG CCAATCCGGT GACGGCCGCC CGCAACCGCG AGAACGCGAT CTTCACCAAC
TATCAGACCT TCGCCAAGGC CGGACTCGAC CCACAGTCCA ACGACAAGAC CGCCTCCGGC
TGGGCGATGC CGGATCTGGA CGTGGTGTTC GACACCGGTG ATCCCGCTAC ATACAAGTCC
TTGGTATCCA CCCTCAAGAA GTCCAAGCTG CCCGCCAAGG GATACGAGGT GTCTTCCCCT
TCGCTGGAAT CCTACAACGC TTCTCTGGAG CCGCTGGATA CGCTATCCTC GCGCGCGAAG
ACCGGCACCA TTGCGTTGGT TGCCGTGGGC GGCGTGCTGT TGCTCATCCT CGTGCTGTCA
GGCGTGTGGA CGCCCAAGCG TGACGACGAG ATCGGCATGG CACTGGTGTC CGGCGTCACT
CGCGGGCGTT TGGGATGGCA GTTCATGCTG GAAGTGTTCA TCGTCACCCT GCCCTTCTAC
GTAATTGGTC TGGTCGGAGG CGCGTTCGCC GCCAAGCCGA TCGGACCTGC TCTGGCATCC
GGCCATGCCA TCCCGGTGAC ATCGGACCTG ATTTGGACCA TGGTCTGGTA TGGACTGGGT
TCAATCCTGA TCCTGGCGAT TCTTGCCGCC CTGCGCCTTG CGTTCTTCAG CGCGAACAAG
CTGTTCGCCG CCGATGGCGA CTGGGGCACC GTGAGCGAGG CCAACAAGAC GACCACCACA
ACCGACGATG CGGAGGCACA GGCATGA
|
|---|
| Protein sequence | MFVLSNAWRA LTRSKGRTAL TAFITLAVTF GTVAGLAIIQ EDTNAHTTTY DQQKATLAIR
PTAATWKKVS ATDSASTKHY MTWTSYTEYA TLVQSATNSL NFTVTETVPA RVSGDLKALD
GGSLGSASDD ETGGQLIWRA FWTEDAAKAS DLGTFEIVDG KDLSYNNQSS NPNTTGALVS
EAFASANNLK VGDTLKVAAA SDAQTTAELK VRGIYKYTSE SAVANPVTAA RNRENAIFTN
YQTFAKAGLD PQSNDKTASG WAMPDLDVVF DTGDPATYKS LVSTLKKSKL PAKGYEVSSP
SLESYNASLE PLDTLSSRAK TGTIALVAVG GVLLLILVLS GVWTPKRDDE IGMALVSGVT
RGRLGWQFML EVFIVTLPFY VIGLVGGAFA AKPIGPALAS GHAIPVTSDL IWTMVWYGLG
SILILAILAA LRLAFFSANK LFAADGDWGT VSEANKTTTT TDDAEAQA
|
|---|
| |