| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1541 |
|---|
| Symbol | abfA4 |
|---|
| ID | 6364356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 1829160 |
|---|
| End bp | 1831625 |
|---|
| Gene Length | 2466 bp |
|---|
| Protein Length | 821 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642680732 |
|---|
| Product | alpha-L-arabinofuranosidase |
|---|
| Protein accession | YP_001955484 |
|---|
| Protein GI | 189440403 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3534] Alpha-L-arabinofuranosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACA AACTGGTAGC CACATTGGAC AAAGCTGGTG TACGCAAGAT CAGCACGGAC
CTGTGGGGCG TGTTCTTCGA AGACATCAGC TATTCGGGCG ATGGCGGGCT CAACAGCGAA
CTCGTGCAAA ACGGCGCGTT CGAATACAAC CGTGCGGATA AGCCCGAGTG GAGCAACTAC
ACCGCTTGGC GCAAGATCGT GCCCGCCGGC TCGTTCGCCG CATTCGGTGT GGGGGAGACC
GCGCCGGTGG CCGAAGAGAA CCCGCATTAC GCGATTGCCG AAATCGGCAA GGTGAGTGGC
GAGCAGACTG CTGACTCGGC TGTGTCTCGG GCCGATTCGG CCCTATCCCA GACGGATTCG
GCTTGTACCC CCGCAGCTCC CGCTCTGGAA AACCTCGGTT TCGACGGCAT GGTGTTCCGC
GCCGGCGAGA CCTACGATTT TTCCATCTGG ACCCGTGCCC ACGGCAAAGC GCTGCCCGTG
CAAGTCGCAC TGATTGGCGA TGATGGCAAG CCGCTCGCTG CCACTGTCGT GACCGCACCC
GCCTCCAATG CTTGCGGCGA ATGGACCCAG CTTCGCGCCG AACTGACTAT TACTAGCGCA
CAGGCCGCCC CGCAACCCAA CGCCGAAATC ATCGCCACCC AAGGCGCTCT CCGCCTGATT
TTCCCCGAAC CCGGCACCAT CGACCTTGAC TTCGTCAGCC TCGAACCGCG AACCACCTAT
AAGGACCTCA AGCATTTCCG CCCGGATCTG GTCGAGGCGC TGGCCGACCT ACACCCGCGC
TTCATGCGCT TCCCGGGCGG CTGCATCACC CACGGACTGG GCCTGAACAA CATGTATCAC
TGGGACCGCA CCATCGGCCC GGTGGAGCAT CGCCCGCACA ACTTCAACGT ATGGGGCTAC
CACCAGTCGT TCCGTATCGG TTTCTACGAG TACTTTCGCC TGTGCGAGAC CATCGGAGCC
AAGCCGCTGC CCGTGCTGCC GGCCGGCATG AGCTGCCAGA ACACCAGCCA GGGCCCGGTG
CCTGTGGCTC AGGAAGACAT GCCCGCTTAC ATCGACGAAG TGCTGGGCCT CATCGACTTC
TGCAACGCCG ATTCGGCCAC CAACAAGTGG GCCGCCAAGC GCGCCGCAAT GGGCCATATC
GAGCCGTTCA ATCTGGAGTA TCTCGGCATC GGCAACGAGG ACCTGATCGA CGACGTGTTC
AAGAACCGCT TCCAGCAGAT TTTCGACGCC GTCAAAGCCG CGCACCCCGA AATCACCGTG
GTCGGCACGG TCGGGCCTGC GCCGAGCGGA CAGGACTACG AGCAAGGTTG GGCGTATGCG
CGCGAGGCCG GCATTCCGAT CGTGGACGAG CATTCCTACC AGTCCTCCAG CTGGTGGTTT
CACAACCTCG ACCACTACGA TCACACCGAC CGCAAGGGCC CGAAGGTCTA CCTCGGCGAA
TACGGCTCCT GGGACACCCA GCTCATCAAC GGCTTGTCCG AAGCGGCGTT CATGGGCCGC
ATGGAATTGA ACGGCGACGT GGTGCACATG GCGTCCTACG CGCCGCTATT TGCCAAGAAC
GGCCACACCA GCTGGAATCC GGACCTCATC TACTTTGACA ATGAGAACGT CTACCGCCCG
TACAGCTACT GGGTGCAGCA GATGTACGCC ACCACCACCG CGGACACCGC TTGGCCGGTC
TCGCTTGACG GACCCACCAC GTTGCGTCGT GACTTGCCGA ATACCGTAAG CCTGAAGATC
GATGGCGGCG CCCACGCCGA TTTCTCCGAC TTCTCTCTCG AGACGGCCGA TGGCACGCAT
ATCGATCTGC CGGACGTGAG CTACCAAGGC AATGGGCCGG TGTCTCTTCC GGTACCTGAG
GGTCTGACGG CCGATTCATA CACCATTCGC GCGAAAGTCA CCTATTACGA AGGCATGTGG
GGCGTGCGAA TCGCGTCCGG CGACGTAAAC GGCAAGAACT ATAACGGTAC TTCGCTTGGC
CGTGGATTCA GCGTGCAAGT AGTGCGCGAA GGCACCGGTT ATGCACTCGC CGGCACGGAA
ACTTCAATGG ACGCGGTACG CCCCGGAACC ACGTGGGATG TGCGCATTGA GATTGGCGAT
CGCGGCGAGC AGATGCGACT GTACATCGAC GGCGCGCTGG TCGCCGACGG CCATGAGACA
CCGGACGAGC CGCGCCGGAC CGTCACCGTA TCCCGCGATT CGACGGCTGG CGTGACTTAC
TTGCGTGTTG TCAACGCGCT GCCTGAATCC GTAGACGTGG ACTTGGCTCA GGTGCTTGCT
GCGCTGAATG TGCCTGATTC AGCCAAGGCT GTAGTTGAGG CAACCGTGCT TACCGGCAAC
GATCCGTATG CAGGGATTCG GGGAGAGGAA TCACCGACTT GCCCCACCTC GCACGAAGTC
AACCTTGCTG ACGGTACATA CACCGCTCCT GCTTGGTCGT TCACCACGCT TGCCGTACGA
GGCTAA
|
|---|
| Protein sequence | MADKLVATLD KAGVRKISTD LWGVFFEDIS YSGDGGLNSE LVQNGAFEYN RADKPEWSNY
TAWRKIVPAG SFAAFGVGET APVAEENPHY AIAEIGKVSG EQTADSAVSR ADSALSQTDS
ACTPAAPALE NLGFDGMVFR AGETYDFSIW TRAHGKALPV QVALIGDDGK PLAATVVTAP
ASNACGEWTQ LRAELTITSA QAAPQPNAEI IATQGALRLI FPEPGTIDLD FVSLEPRTTY
KDLKHFRPDL VEALADLHPR FMRFPGGCIT HGLGLNNMYH WDRTIGPVEH RPHNFNVWGY
HQSFRIGFYE YFRLCETIGA KPLPVLPAGM SCQNTSQGPV PVAQEDMPAY IDEVLGLIDF
CNADSATNKW AAKRAAMGHI EPFNLEYLGI GNEDLIDDVF KNRFQQIFDA VKAAHPEITV
VGTVGPAPSG QDYEQGWAYA REAGIPIVDE HSYQSSSWWF HNLDHYDHTD RKGPKVYLGE
YGSWDTQLIN GLSEAAFMGR MELNGDVVHM ASYAPLFAKN GHTSWNPDLI YFDNENVYRP
YSYWVQQMYA TTTADTAWPV SLDGPTTLRR DLPNTVSLKI DGGAHADFSD FSLETADGTH
IDLPDVSYQG NGPVSLPVPE GLTADSYTIR AKVTYYEGMW GVRIASGDVN GKNYNGTSLG
RGFSVQVVRE GTGYALAGTE TSMDAVRPGT TWDVRIEIGD RGEQMRLYID GALVADGHET
PDEPRRTVTV SRDSTAGVTY LRVVNALPES VDVDLAQVLA ALNVPDSAKA VVEATVLTGN
DPYAGIRGEE SPTCPTSHEV NLADGTYTAP AWSFTTLAVR G
|
|---|
| |