| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1526 |
|---|
| Symbol | apbE |
|---|
| ID | 6363883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 1806428 |
|---|
| End bp | 1807474 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642680716 |
|---|
| Product | membrane-associated lipoprotein for thiamine biosynthesis |
|---|
| Protein accession | YP_001955469 |
|---|
| Protein GI | 189440388 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGTC TGACCGAGCA ACTGCCATAC GTATACGCTT TTCCTGATGC GTTGGGGACC
GGATTACTGG TGCACACCGA GAGCGTATTG GACGATGAGA TACGCGATCG TATTGGCTCG
TTCATCCATG AATATGAGGT TGTATTATCT CGATTCCGCG ATGATTCCAT CGTCGGCCGG
ATGCGCACGG CCGCACATGG CGGCACGTTC GATTTTCCCG ACTGGGCATC GGGTCTGTTT
GGCCTGTACG ACCGCCTGCT TGCGGCAACC GATGGGGCGA TCGACCCGTG CGTGGGCGAG
GATTTGATTC GGCTTGGCTA TGACGAGTCG TATTCGTTTA CGCCTGCGCC AGATGCCGCT
GAACATGCAG GCGCGATCCA CGGACGAGCC ATTTGGTCAG CCGACGTTGA GCGGCATGGC
ACAACACTGG TGACGCGCGG ACCGGTCGCG CTCGATTTCG GCGCGTGCGG TAAGGGGTAT
TTGGTGGATT TGCTTGCGGG GATGTTGGGC GATGGCGCGG GCCACCCTCA ACCCATTCAA
TACGTCATCG ACGCCGGGGG TGATTTGCTA GTGCATACGG ACGAACCAAT CACCATCGCC
CTTGAAGATC CTGCCGATCC GGCCAACGCC GTAGGTGCGG TCGAAATCAG CCAAGGTGCA
TTCTGCGCGA GCTCCCCCAG CCGCCGCCAC TGGTCTGACG CCGCAGGTCA CCAACTTCAC
CATCTGCTCA ACGCCATCGA CGGACTACCG GTTGACGATG TAGCCGCCAC ATGGGTGGCC
GTCACGCCGC CATCGAGCGC CATAACCACG AAGACATCGA CGCATGCCAG CAATGCCTCG
ACAACGGCAA ACCGCGATAC CGACGATTCG TCGAACACCG TTGCAGCACA CGTCCCTGTC
ACACTGGCCG ACGGACTCGC CACTGCTCTG TTCACCACCT CGGCCACCCA GTTACGCGCT
CATTTCCCCT TCGAATGCGC CATCCTCAAC GCCAACCGCA CCGCCGCCCA ATCCCCCAAT
TTTCCGGGCG GTTTTTTCAC ACACTAA
|
|---|
| Protein sequence | MTSLTEQLPY VYAFPDALGT GLLVHTESVL DDEIRDRIGS FIHEYEVVLS RFRDDSIVGR
MRTAAHGGTF DFPDWASGLF GLYDRLLAAT DGAIDPCVGE DLIRLGYDES YSFTPAPDAA
EHAGAIHGRA IWSADVERHG TTLVTRGPVA LDFGACGKGY LVDLLAGMLG DGAGHPQPIQ
YVIDAGGDLL VHTDEPITIA LEDPADPANA VGAVEISQGA FCASSPSRRH WSDAAGHQLH
HLLNAIDGLP VDDVAATWVA VTPPSSAITT KTSTHASNAS TTANRDTDDS SNTVAAHVPV
TLADGLATAL FTTSATQLRA HFPFECAILN ANRTAAQSPN FPGGFFTH
|
|---|
| |