| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1418 |
|---|
| Symbol | |
|---|
| ID | 6362995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 1644489 |
|---|
| End bp | 1646087 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642680602 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_001955361 |
|---|
| Protein GI | 189440280 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATACGC CATCGCCATC AACCGCATCA ACAACCGCAC ATGCCGTCGG CTACAACGAT
GAGCCAAGCA TTACGGCCGC TCCCCTGCGT TCCACCGACG ACCTGGCCGT TGATGCCGGC
CAGTTATCCT CACTCATCCT CACCACCGAG GCGACGGCCA CCCCGCAACG CATCGTCGAA
TCGGTCACCT CGCTGACCTC CTCCGGCATA CTTGCGGAAG GCCAGCGCAT GCCCACCGTA
CGCGATCTCG CCCGACTGCT ACGCACCAGT CCGGCCACCG TCTCCAGTGC CTACCATGCC
CTCGCCAGGT CCGGCATACT GCGCTCCCGC GGGCGCGCCG GAACATTCGT ACTGCGGCAG
TCGCGCACGC ATCGCTACGA TGCCGGCGAC TTGCTGGCCG AAGCCCCGGC CACCGCGCCG
GACCGACCGA TTATCGACCT GTCCAAGGGC ACGCCGGACC TTTCGCTGCT GCCGGACATC
CGCCCGTTTC TCGGCAAGCT CGGCACGCAC AAGGCATTCG TCAATTCATA CGACGGGCCG
ACCATCCTGC CCATGCTGGA ACAGATTTTG CGACGCAACT GGCCGTATGA GCCGGAGGCG
ATGACTATGG CATCCGGCGC GGGCGACGGT TTGGCGCACA CCATGAACGC TTTTGTTCAG
CCGGGTGATT TTGTGATTAC CGAGGCACCG GAATATCCGC TGATTCTCGA CATGATCGAG
GCACATGGCG CGATGGCGTT CGGCGTGCCG ATGGACGGGT TCGGTATGCT GCCCGACGCA
CTCGACCGTG CGCTGACCAT GCTGGAATTG CAGCGTCTGG CGGTGCCGCA CGGCGGCCAT
CAGGTCAGTA TGATCCTGCT GCAGCCGCGC GCCCAGAACC CTACCGGGGC CAGCTTCAGC
CCGCAACGCA TCGACGCTTT GGCGGACGTG CTGCTCGCGC ACTACCCGAA TGGCGTTGGT
ATGCCGCTGA TTGTGGAAGA CGATCACAGT GGCGATGTGG CCAATGCGTA TGCGACATCG
TTGGCGCAAC GATTGCCGCA ACACGTGGTG CATATCCGCA GTTTTTCGAA GTCGCACGGG
CCGGATCTGC GCTTGGCTGC GCTGTCTGGG CCGGAGGATG CCGTGGAGGC GATTATCGCC
CAACGACGCT TGGGATCGGG ATGGGTGAGC CGGTTCCTGC AAGAGATTCT GTATGAAATG
CTGGCCGACA AAGAGGCGTT CCACACGGTG ACCAACGCCC GGCATATCTA CGCCACCCGG
CAAAAGACGA TGCACGCGCT GCTGCTGCGT CAAAGTTTGG ACGTGCATAC CGGTGACGGA
CTGAATCTGT GGATTCCGGT GCGCGACGAG CCGGCGGCGC TGCGACTGCT GGCCGAACAG
GGCATCCGTG TGGCCGCCGG CAAGCCGTTC CTGCCGAGCC TGCGTATCAG CGCCGACGCC
ACCGGAGCCG ACGCGGGGGC CGGTGCGGGC GTGGACGCGC ATGCCAGTCG AGGCATCCGC
GTCACCATCG CACAGCAGGG AGCCGTCAAC GAACAAGTGG CCGCCGCCCT GGCTCAGGCG
GCGGCCGTAA CGCCGAAGAC TTCGACGAAT CACTCGTAA
|
|---|
| Protein sequence | MDTPSPSTAS TTAHAVGYND EPSITAAPLR STDDLAVDAG QLSSLILTTE ATATPQRIVE
SVTSLTSSGI LAEGQRMPTV RDLARLLRTS PATVSSAYHA LARSGILRSR GRAGTFVLRQ
SRTHRYDAGD LLAEAPATAP DRPIIDLSKG TPDLSLLPDI RPFLGKLGTH KAFVNSYDGP
TILPMLEQIL RRNWPYEPEA MTMASGAGDG LAHTMNAFVQ PGDFVITEAP EYPLILDMIE
AHGAMAFGVP MDGFGMLPDA LDRALTMLEL QRLAVPHGGH QVSMILLQPR AQNPTGASFS
PQRIDALADV LLAHYPNGVG MPLIVEDDHS GDVANAYATS LAQRLPQHVV HIRSFSKSHG
PDLRLAALSG PEDAVEAIIA QRRLGSGWVS RFLQEILYEM LADKEAFHTV TNARHIYATR
QKTMHALLLR QSLDVHTGDG LNLWIPVRDE PAALRLLAEQ GIRVAAGKPF LPSLRISADA
TGADAGAGAG VDAHASRGIR VTIAQQGAVN EQVAAALAQA AAVTPKTSTN HS
|
|---|
| |