| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1287 |
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| Symbol | srtA1 |
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| ID | 6363489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 1486573 |
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| End bp | 1487706 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642680469 |
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| Product | sortase |
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| Protein accession | YP_001955230 |
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| Protein GI | 189440149 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCATTGC TGCATCGACG TTCGACGAGT AAGCGTGCCT CACAGAAAAT GTGGGAAAAC
AACGCGGCCA TGCCGGATGA CGCATCTGCA AATGACAACG TTTCCTCAGC GCGGCCCGAG
CCCGCAGCAT TCGTTCCAAC ACCATTTGAC GAAGTCATCG ATATCAGCGA TCTCGTGGCC
GAGCGCCGAC GCCTGCAACG CAACCTGTGG GCGATGCGCA TCATCACCAT TGTGCTGCTG
ATCGCCGCAA TCGCCGTGGC CTGCTTCCCG CTAGCGTTGC AATTCGAGTC CGACCGCAAC
TTGGCCGCCA CCACAGCCAC CACGGCCAAA GAAGTAGCTG GCTGGCCTTA CCCGCAGGCG
GAAGACAAGC TCACGGCGGC CCGCGCATAC AACAAGAAGC TCGCTGAATC CGGCCAGCCT
ATCTTGGGTG AAGCCGTCGA TCCGTTCGCC GCCGCTCAAG GAGGATCCCA AGCCAGCGGC
GAGGATTCCG CCTCAAAGAA AGACAAGGAA TACCAGTCAC TGCTTAATAC CGGCAACGGC
GTGATGGGCA CAATCAAGGT GCCCAAGCAG TCCATCAATC TGCCGTTTTA TCACGGCACT
TCCGAGGAAG CACTGGCTTC TGGTGCCGGC CACTTGTACG GCACGTCGCT GCCGGTGGGA
GGTAAATCCA CCCATTCGGT CATTACCGGG CACCGCGGGT TGGTTGAAGC GCTGATGTTC
ACCCGTTTGG ACGAGGTGAA AGAGGGCGAC TTCTTCTACA TCGAAGTCAT GGGCGAAACT
TTGGGCTACA AAGTGGACCG CATTTCGGTG ATTTTGCCGG ATGACACGTC GAAGCTCAAG
ATCGTGCCGG GTGAGGATCG CGTCACTTTG ATGACCTGTA CGCCATACGG CGTGAACACG
CACCGACTGC TTATCTCCGG GCACCGCGTG GCGATTCCGA TGCCGGCCCC CGAGCCGAAT
GACGTGCTTG ACGCGCGCAA TATCGCCCTT GGTGTTGGTC TAGGCATACT GGCGGCAGGA
CTGTTCATTA TCTGGTTGGC ACGACGCCAC AAGGCCGCGC GCATCATCCG CCACGGCACA
TTCTGGCCGT GGATGCGCCG CAAGGGCGAA AGCGCCAATG ATACGCTGGC TTAG
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| Protein sequence | MALLHRRSTS KRASQKMWEN NAAMPDDASA NDNVSSARPE PAAFVPTPFD EVIDISDLVA
ERRRLQRNLW AMRIITIVLL IAAIAVACFP LALQFESDRN LAATTATTAK EVAGWPYPQA
EDKLTAARAY NKKLAESGQP ILGEAVDPFA AAQGGSQASG EDSASKKDKE YQSLLNTGNG
VMGTIKVPKQ SINLPFYHGT SEEALASGAG HLYGTSLPVG GKSTHSVITG HRGLVEALMF
TRLDEVKEGD FFYIEVMGET LGYKVDRISV ILPDDTSKLK IVPGEDRVTL MTCTPYGVNT
HRLLISGHRV AIPMPAPEPN DVLDARNIAL GVGLGILAAG LFIIWLARRH KAARIIRHGT
FWPWMRRKGE SANDTLA
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