| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1276 |
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| Symbol | topA |
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| ID | 6363902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 1469415 |
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| End bp | 1472501 |
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| Gene Length | 3087 bp |
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| Protein Length | 1028 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642680458 |
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| Product | topoisomerase I |
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| Protein accession | YP_001955219 |
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| Protein GI | 189440138 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTACCA AACTGGTGAT TGTGGAGTCT CCGACCAAGG CCCACAAGAT CGGTGACTAC
CTGGGCAAGG GGTACACCGT CATGGCGTCG GTCGGCCATA TCCGAGACCT CGCGCAGCCC
AGCCAGGTGC CCGCGGCAGA CAAGGCCAAG TTCGGCAAGT TCGGCGTGGA CGTCAACGAC
GGGTTCAAGC CGTATTACAT TGTCGACGGC GACAAGAAGC GTACGGTCAG CGAACTCAAA
TCGGCCCTGA AGAACGCCGA TGAACTCTAT CTGGCGACTG ATGAGGATCG CGAGGGCGAG
GCCATCGCGT GGCACTTGGT GCAGACCTTG AAACCCGAGG TGCCGGTCAA GCGCATGGTG
TTCCACGAGA TCACCAAGAA CGCCATCAAC GCCTCCCTGA ACAACACGCG CGATGTGGAT
GGCAATATGG TCGACGCACA GGAGACCCGC CGCATCCTCG ACCGTCTGTA CGGCTATGAG
CTGTCGCCGG TGCTGTGGCG CAAGGTGGGC CCAGGCCTGT CCGCCGGCCG CGTGCAGTCC
GTGGCCACCC GCCTGATCGT GGAACGCGAG CGCGAACGCA TGGCGTTCAA GCGCGCACCG
TACTGGGATA TCGTCGCCAC GCTGTCCGCG CCTGACGCGC TGGGGGAGCG TGCCGAATTC
TCCGCCCGCA TGATCGCGCT CGGCGGCAAG CGACTCGCCG GCTCCAAGGA TTTCGGTGCC
GACGGCCAGC TGACCCCGGA CGGGTTCGCG GCGAACGTTC GCCAGCTTGA TGAGGCTGGT
GCCACTGCCG TGGCTGAAGC GCTGAGGACC GCCGATTTCA CTGTGATGTC GATGGAAACC
AAGCCGTACC GCCGCCGCCC GCAGCCGCCG TTCACCACCT CGACCTTGCA GCAGACCGCC
GGCAATCGCC TCGGCATGGG TGCTCGCGTC GTGATGCGCG CGGCCCAAAG CCTGTACGAG
AACGGCTACA TCACCTATAT GCGAACCGAT TCGGTGACGC TGTCGCAGGA GGCCATCACC
GCCGCCCGCA ACGCCGTCTC CTACCATTTC GGAGACAAGT TCCTCTCCGC CGAGCCCAAG
CAGTACGCCA CCAAAACCGC TGGCGCGCAG GAAGCCCACG AGTGTATTCG CCCGGCGGGC
TCGCGCTTCC ACGACCCGGA CGAGCTGGCT TCCAAACTTC CCGGCGACCA GCTGCGCCTA
TACACGCTGA TCTGGCAGCG CACGCTTGCC TGCCAGATGG CTGACGCCAC CGGTTCCACC
GCCACCGTGC GCCTGTCTGC GCCGGCCGGC CCCACCGAGG GCGAGGCCGT GTTCCAGGCG
TCCGGCACCG TCATCGAATT CCCCGGCTTT ATGAAGGCCA CGGGGGAGGG GCGCAAGCCC
AAGGCCGCCG CTCCCGGCGC TGGGGCTGGC TCGGACCAGG CTGCTGCCGC CGGCAAGACG
GACGCCAAGG CCGTCAGGGG TGACGCCTCC GAATCCAACA CCTCCCTGCC GCCGATGAGC
GTCGGCCAGC AGGTCGAGGC AAGCGACATC GAACCGGACG GCCATGAAAC CCAGCCGCCG
GCCCGCTACA CCGAGGCCAC GCTGGTCAAG ACGCTGGAAG CCAAGGAGAT CGGTCGCCCG
TCCACTTACG CGAGCATTAT CTCCACAATC ATGGATCGCG GTTACGTATA CGAGCGTGGC
CGTGCGCTGA TCCCCAGCTG GCTCGCCTTC TCCGTGACCA AGTTGCTCGA GACGAACTTC
CCCAAGCTGG TCGACTACCA GTTCACCGCC GAGATGGAAA ACGGCCTTGA CCGCATCGCC
CACGGCGAGG AATCCGGCCG CGACTGGCTC ACCCACTTCT ACTTCGGTTC CGGCGAGGGC
GCCGCCCGCA ACGCCGACGA GGCGCACGAA GGCCTGCAAC AGCAGGTCGC GCAGCTCGGC
GAGATCGACG CGCGCGCCAT CAACACCATC GACATCGGCG ACGGCCTGCA CGTGCGCGTC
GGCCGTTACG GCCCGTATCT GGAAGACATG GAGCATCTGG ACGCCGAAGG CAACCCGAAG
CGCGCGTCTC TGCCGGACAC CATCGCGCCG GATGAGCTGA CGGTGGCCGT GGCCCGCGAT
TTGATCGACA ACCACTCCGG TGGACCGCGC GAGCTGGGCG TTGATCCGGT ATCCGGCGGT
ACCGTCGAGG TGCGCAATGG GCGTTTCGGC CCGTATGTGG CGTTGGTGCC GCCGGCTGAG
GCTTCGGCTG GCGCTGCTGG CGATACTGCT GGTGCTTCTG CGGCCAAGAA GGGTTCGAAG
AAGGCCGCGG CCGCCGCCGC GTCGCGCCCG AAGATGGCCT CGTTGTTCAA GACGATGAGC
CCTGAATCGC TGTCGCTGGA AGACGCGCTA AAGCTGCTGA GCCTGCCGCG CGAAGTGGGC
ACATACGAGG AAACCAACGC CGAAACCGGC GAGGTATCCG AATGCACGGT GGCCGCCAAC
AACGGTCGCT ACGGCCCCTA CCTGACCAAG ACGGGTGCCG ACGGCAAGTC GGAGACCCGC
TCGCTGGCCT CGGAAGACGA GATCTTCACG GTCGATATCG ACAAGGCCAA AGAACTGTTC
TCGCAGCCCA AGTACGGCCG CGGGCGTGGC CGTGGTGCCG CCAAGCCGCC GCTGCGTGAT
TTGGGCAAGG ACCCGAACAC CGGCAAGAAC GTGACCATCA AGGACGGCCG TTTCGGCGCG
TACATCACCG ATGGCGAGAC CAACCGTACG GTGCCGCGTC AGTACACGCC TGAATCCATC
ACCCCTGATG ACGCCTTCCG ACTGCTCGCC GAAAAGCGTG CGGCTGGTCC CTCCACCCGT
GGCCGTCGCG GTGCTGGGCG TGCTGGTGGC GCCAAGGCCG TTGCCGGCAA GGGCAAGAAG
GGCGGTACCT CGGCTGCGGT TTCGGCGCAG GAGGCCAAGC GCGCCGAACG CCGTGCCGAA
GTCAAGAAGT TGGCGAACAA GGGCTGGTCC AACCAGCGCA TCGCCGAAAA ACTCGGTTCC
ACCCCCGCCA CTGTGAAAAA GGACGTCGAC TGGCTGACCG CCAACGAGGG CTACGAGCGC
CCCGCCGTAA TTCCCAAGCG TGGCTGA
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| Protein sequence | MATKLVIVES PTKAHKIGDY LGKGYTVMAS VGHIRDLAQP SQVPAADKAK FGKFGVDVND
GFKPYYIVDG DKKRTVSELK SALKNADELY LATDEDREGE AIAWHLVQTL KPEVPVKRMV
FHEITKNAIN ASLNNTRDVD GNMVDAQETR RILDRLYGYE LSPVLWRKVG PGLSAGRVQS
VATRLIVERE RERMAFKRAP YWDIVATLSA PDALGERAEF SARMIALGGK RLAGSKDFGA
DGQLTPDGFA ANVRQLDEAG ATAVAEALRT ADFTVMSMET KPYRRRPQPP FTTSTLQQTA
GNRLGMGARV VMRAAQSLYE NGYITYMRTD SVTLSQEAIT AARNAVSYHF GDKFLSAEPK
QYATKTAGAQ EAHECIRPAG SRFHDPDELA SKLPGDQLRL YTLIWQRTLA CQMADATGST
ATVRLSAPAG PTEGEAVFQA SGTVIEFPGF MKATGEGRKP KAAAPGAGAG SDQAAAAGKT
DAKAVRGDAS ESNTSLPPMS VGQQVEASDI EPDGHETQPP ARYTEATLVK TLEAKEIGRP
STYASIISTI MDRGYVYERG RALIPSWLAF SVTKLLETNF PKLVDYQFTA EMENGLDRIA
HGEESGRDWL THFYFGSGEG AARNADEAHE GLQQQVAQLG EIDARAINTI DIGDGLHVRV
GRYGPYLEDM EHLDAEGNPK RASLPDTIAP DELTVAVARD LIDNHSGGPR ELGVDPVSGG
TVEVRNGRFG PYVALVPPAE ASAGAAGDTA GASAAKKGSK KAAAAAASRP KMASLFKTMS
PESLSLEDAL KLLSLPREVG TYEETNAETG EVSECTVAAN NGRYGPYLTK TGADGKSETR
SLASEDEIFT VDIDKAKELF SQPKYGRGRG RGAAKPPLRD LGKDPNTGKN VTIKDGRFGA
YITDGETNRT VPRQYTPESI TPDDAFRLLA EKRAAGPSTR GRRGAGRAGG AKAVAGKGKK
GGTSAAVSAQ EAKRAERRAE VKKLANKGWS NQRIAEKLGS TPATVKKDVD WLTANEGYER
PAVIPKRG
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