| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1012 |
|---|
| Symbol | |
|---|
| ID | 6363542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 1193334 |
|---|
| End bp | 1193969 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642680180 |
|---|
| Product | lipoprotein release ABC transporter ATPase |
|---|
| Protein accession | YP_001954956 |
|---|
| Protein GI | 189439875 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAACT GTCTGCAACT GGACCATGTC GATTACGCCT ACGGCGCGGC GAAGATCCGT
GTTCTTTCGG ATGTCAGCGC GGATTTCGAA TCCGGGAAGA TGTATGCGAT CACCGGCCCG
TCCGGCGCCG GCAAGAGCAC GCTGCTGTCG TTGCTGGCCG GCCTGGACGC CCCCTCCCGG
GGAGTGGTCC GCTTCGAAGG GGAGGACATC GCCGCATCGG GCTATGCGAA GCACCGCCGG
GAGCACGTGT CCCTGGTGTT CCAGGACCAT AACCTGATCG ACTACCTCAC CCCCGAAGAG
AACCTGCGGC TGGTCAGCGC CAAGGCCGAT ATGAAGATCC TCGAGGAACT GGGTTTGAGC
CGTGAGGAAT CCAAGCGCAA CATCATGCAC CTGTCGGGCG GCCAGCGTCA ACGGGTGGCG
GTCGGCCGCG CGCTGGTCGC CCCGGGCCGC GCGATCCTCG CGGACGAGCC GACGGGCAGC
CTCGACCCGG AGATGACCGA CGAGGTGATT CATCTGCTGC AGCACGCCGC CCATCAGCTC
GGCAAATGCG TGATCGTGGT GACGCATTCC AAGCGCGTCG CCAACTCCGC CGATGTCGTG
CTGCGTCTCA GGAGCAAGAA ACTGACCCGG GCATGA
|
|---|
| Protein sequence | MSNCLQLDHV DYAYGAAKIR VLSDVSADFE SGKMYAITGP SGAGKSTLLS LLAGLDAPSR
GVVRFEGEDI AASGYAKHRR EHVSLVFQDH NLIDYLTPEE NLRLVSAKAD MKILEELGLS
REESKRNIMH LSGGQRQRVA VGRALVAPGR AILADEPTGS LDPEMTDEVI HLLQHAAHQL
GKCVIVVTHS KRVANSADVV LRLRSKKLTR A
|
|---|
| |