| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0968 |
|---|
| Symbol | cspR |
|---|
| ID | 6363197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 1133293 |
|---|
| End bp | 1133955 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642680136 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001954912 |
|---|
| Protein GI | 189439831 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.815301 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACG AAGCAGAACA GAATTCGCAG AACGCACAGA ATCCCGAAAC AAAAGTCGAG
AAGATGTTCG AGTACGGGTA CCGTAAATCG AATTACGGAC CGGACGAACT CGTAACCGAC
GCGCATGGCA ACCCCATCTC CGTGGTGGAC GCGATGCTCT CGGCTGAAAA GGCCGCCACC
ACCGAAACCG TAACACCGCA TCTGTGCTAC TACTCACCGC GCATTCCCGG CAACACCGGC
TCGGCCATCC GCCTGTGCGC GGTGACCGGC ACCATCCTGC ATTTGGTGGA GCCGTTGGGT
TTCAACCTGC GCGACACCAA GCTGCGCCGA GCAGGCCTCG ACTACCACGA CATGGCCCAC
GTGGTGCTGC ACCCGAATTT CGACAACCTG GTGGAGTCCA TGCCCAATTC GCGCATCATC
GCGTTCACCG CACATGCTAC CAAGCTGTAC ACCGAGGTGG AATACAAGCC GACCGACATC
CTGCTGTTCG GCCCCGAGCC CGGCGACATC CCCGACCCGA TGGACATCAT GGAGGGCCCT
CATGTGGCCG AACAAGTGCG ACTGCCCATG CGCCCGTCCT TGCGTTCCCT GAACCTCACC
AATTGCGCGT CCATCGCCAT CTACGAAGCC TGGCGCCAAC TCAACTTCGC TGGAGGGCGC
TGA
|
|---|
| Protein sequence | MTNEAEQNSQ NAQNPETKVE KMFEYGYRKS NYGPDELVTD AHGNPISVVD AMLSAEKAAT
TETVTPHLCY YSPRIPGNTG SAIRLCAVTG TILHLVEPLG FNLRDTKLRR AGLDYHDMAH
VVLHPNFDNL VESMPNSRII AFTAHATKLY TEVEYKPTDI LLFGPEPGDI PDPMDIMEGP
HVAEQVRLPM RPSLRSLNLT NCASIAIYEA WRQLNFAGGR
|
|---|
| |