| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0964 |
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| Symbol | rpoC |
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| ID | 6363193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 1123576 |
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| End bp | 1127613 |
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| Gene Length | 4038 bp |
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| Protein Length | 1345 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642680132 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001954908 |
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| Protein GI | 189439827 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGGACG TCAACGCATT TGACAAGATT CGCATCGGCC TTGCCACCGC CGATGACATC
CGTGGTTGGA GCCACGGTGA GGTCAAGAAG CCTGAAACCA TCAACTACCG TACGCTGAAG
CCTGAGAAGG ACGGTCTGTT CGGCGAACAG ATCTTCGGCC CGACCCGTGA CTGGGAGTGC
GCCTGCGGCA AGTACAAGCG CGTGCGCTTC AAGGGCATCG TCTGCGAGCG ATGCGGCGTC
GAAGTGACCC GCAGCCGCGT GCGCCGTGAG CGCATGGGCC ACATCGAGCT CGCCGCCCCG
GTGACGCACA TCTGGTTCTT CAAGGGTGTG CCTTCCCGCC TCGGCTACCT GCTGAACGTC
ACCCCGAAGG ACCTGGAGCG CGTGATTTAC TTCGCCTCCT ACATGGTCAC CGAGGTGAAC
GAAGACGAGC GTCACAACGA TCTGCCCGGC CTGCAGGACG AGTTCGATTC CGAGATCAAG
CGCCTTGAGC AGCGCCGTGA CTCCGACATC GAAGCCCGCG CCAAGAAGGT CGAAGAGGAT
CTCGCCGCCC TTGAGGAGGC CGGCGAGGCC AAGGGCCCGG CCCGCACCAA GTTGCGTAAC
GGTGCCGAGC GTGATATGGC TGCCATCCGC ACCCGCTACA ACGACCAGAT CGCCCGTGTG
GACGCCGTCT TCGACAAGTT CAAGAAGCTC AAGCCCGGCG ACATGGTCGA CGACGTGGAC
CTGTGGCGCG AGATGCAGGA CCGCTACGGC GATTACTTCG ACGGCTGCAT GGGCGCCGAA
GCCATCAAGA AGCGCCTGCA GTCCCTCGAC CTGGAGACCA TCTCCAAGGA ACTGCGCGAG
GAGATCAAGG ACGCTTCCGA ACAGCGTAAG ACCAAGGCCC TGAAGCGCCT CAAGGTCGTC
AACGCCTTCC TGACCACCGG CAACAAGCCG GAGGCCATGG TGCTCGACGT GATCCCGGTC
ATCCCGCCGG ACCTGCGCCC GATGGTCCAG CTCGACGGTG GCCGCTTCGC CACCTCCGAC
CTCAACGACC TGTACCGCCG TGTGATCAAC CGTAACAACC GTCTGAAGCG ACTGATCGAG
CTCGGCGCCC CTGAAATCAT GCTCAACAAC GAGAAGCGCA TGCTCCAGGA AGCCGTCGAC
TCCCTGTTCG ACAACGGCCG TCGTGGTCGC CCGGTCACCG GTGCCTCCAA CCGTCCGCTG
AAGTCCCTGT CCGACATGCT CAAGGGTAAG CAGGGTCGTT TCCGTCAGAA CCTGCTCGGT
AAGCGAGTCG ACTACTCCGG CCGTTCCGTG ATCGTGGTCG GCCCGTCCCT GCGCATGCAC
CAGTGCGGTC TGCCGAAGCC GATGGCCCTC GAGCTGTTCA AGCCGTTCGT CATCAAGCGC
CTCGTGGACC TGAACTATGC GCAGAACATG AAGTCCGCCA AGCGTCTTGT GGACCGCGGC
GACGCCGAAG TGTGGGGCGT GCTCGAGGAG GTCATCTCCG AGCACCCCGT GCTGCTCAAC
CGTGCACCTA CGCTGCACCG TCTGGGTATT CAGGCATTCG AGCCGATCCT GGTGGAAGGC
AAGGCCATCC ACCTGCCGCC GCTGGCCTGC GCCGCCTTCA ACGCCGACTT CGATGGTGAC
CAGATGGCAG TCCACCTGCC GCTCTCCGCC GAAGCCCAGG CCGAGGCCCG CTCGCTGATG
ATGGCTTCCG ACAACATCCT GAAGCCGGCC GACGGCCACA CCGTGACCAT GCCGAGCCAG
GATATGATCC TCGGTTTGTA CTACCTGTCC ACCGTGCTGG AAGGCGTCAA GGGCCAGGGC
CGCGTGTTCT CCTCGCTGGA AGAGGCCGAA ATGGCCCTCG ACCGCCACGA GATCGACATG
CAGGCCAAGG TGCTCATCCG CCTGCCCGAG AGCTTCGTGC TGCCGAAGAA CTGGGAGCCC
GGCGAAGTCA AGGTGCTCGA CCCGCGCGAA GGCGAGGACG AGGTCGTCAA GGAAGAACGC
TTCCACGACG GCACCGTGCT GTTCGCCACC TCCTACGGCC GCATCCTGTT CAACGAGACC
CTGCCGACCG ACTACCCGTT CGTCAACGAG CAGGTGGCCA AGGGCCGTCT GTCCAAGATC
GTCGATGACA TCGCCATGCG TTACTCCACC CAGCAGGTGG CCGCCACGCT GGATGCCCTG
AAGGATCTCG GCTTCACCCG CGCACCGTGG TCCGGCGTGT CCTTCGCGTT CTCCGACGTG
AACGAGCCGC CCGAGCGCGA CGAGAAGATC GCCGAGTACG AGGCCAAGGC CGACAAGGTC
AACGCCAACT ACGAGATGGG TCTGCTGACC GAGGAAGCTC GTCGTCAGGA ACTCATCGAC
CTGTGGACCG AGTGCACCGC CGAGGTGTCC AAGGAAGTCG AGGAGAAGTT CGACCCGACC
TCCAACCTGG CCATCATCGT GCAGTCTGGT GCACGAGGCA ACATGATGCA GATCAACCAG
ATCGCAGGTA TGCGAGGCCT CGTGGCCAAC CCGAAGGGTG AGATCATTCC TCGTCCTGTG
AAGTCCAACT ACCGCGACGG CCTGTCCGTG CTGGAGTACT TCATCTCCCA GCACGGTGCA
CGTAAGGGTC TGGCCGATAC CGCACTGCGT ACCGCAGAAT CCGGTTACCT GACCCGTCGT
CTGGTCGACG TCTCCCAGGA CGTCATCGTG CGCGAAGAGG ACTGCGGCAC CAAGGCCGGT
CTGCCCATCC GCGTCGCCGA GCGCGACAAC GACGGCAACC TGGTGCTCGT CAAGGCCGCC
GACGGTGGCC CGTACTCCCG TCTGCTCGCC GCCGACGTCA TCGACCCGGC CGACGGACAG
ACCGTGCTGT ACAAGCGCGA CGACGCCCTG TCCATGGACG TGCTCAACGA CCTCGTGGCC
CACGGCGTCG AGGAAGTCAA GTGCCGTTCC GTTCTGACCT GCGAGTCCAA GCGCGGCGTG
TGCGCCAAGT GCTACGGCTG GTCCCTGGCC ACCAACAAGC TGGTCGATGT CGGCGAGACC
GTCGGTATCG TCGCCGCCCA GTCCATCGGT GAGCCTGGTA CCCAGCTGAC GCTGCGTTCC
TTCCACTCCG GTGGTGTGGC CGCGGCCTCC GATATCACCC AGGGTCTTCC CCGTGTCACC
GAGCTTTTCG AGGCCCGCAC CCCGAAGGGT GAGGCCCCGA TCACCGAGTT CGCCGGCAGC
ATCAAGATCG TGGAGAACGA TCGCGGTCGC CAGATCATCC TGACCCCGGA CGCCGATTCC
GGCGCACCGA AGGAAGACGG CGTGATCAAG CCGATCACCT ACCAGGTCTC CAAGCGCGTG
CCGCTCAAGG TTGCCGACGG CGACCACATC AAGGTCGGCA CCCAGCTGGT CGAAGGTTCT
GTGGACCCCA AGAAGATCCT CACCATCCTC GGCAAGCGCG CCGCCCAGGT CAACATCGTG
GAGGAAGTGC ACACCGTGTA CCGCTCCCAG GGTGTGGATA TCCACGACAA GCACATCGAG
GTCATCGTGC ACCAGATGAC CCGTCGCGTG ACCATCATCG ACTCCGGCGA CACCGACCTG
CTGCCGGGTG AGCTGGTGGA CAACGCCCGC TTCCGCGAGA TCAACCGCAA CATCGTCAAG
AACGGTGGCC GTCCGGCCGT CGGTCGTCCG GCGCTTATGG GTATCACCAA GGCGTCGCTG
GCCACCGACT CCTGGCTGTC CGCCGCATCC TTCCAGGAGA CCACCCGCGT GCTCACCGAA
GCCGCCCTCT CCGAGAAGGT CGACGACCTC AAGGGCCTCA AGGAGAACGT CATCATCGGT
AAGCTCATCC CGGCCGGTAC GGGCCTCGCA CGCTACCGCA ACGCCGTGGT CGAGCCCGAC
AAGGCCATCC GCGACACCAT CTACCCGAAC TTCGGTCTGG GCGGCGATGG CGATCTCGGC
GACGCGAGCT TCTCCGACGC CGACCTGTCT GACCTGAACT TCTCGAACCT CGAGTTCGGC
GATCTGAAGC TCGGCGACGA CTTCAACCCG GATGATTTCT ACTCCGATCA GGGCGGTCAG
CCTGACATCG AGGAGTAA
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| Protein sequence | MLDVNAFDKI RIGLATADDI RGWSHGEVKK PETINYRTLK PEKDGLFGEQ IFGPTRDWEC
ACGKYKRVRF KGIVCERCGV EVTRSRVRRE RMGHIELAAP VTHIWFFKGV PSRLGYLLNV
TPKDLERVIY FASYMVTEVN EDERHNDLPG LQDEFDSEIK RLEQRRDSDI EARAKKVEED
LAALEEAGEA KGPARTKLRN GAERDMAAIR TRYNDQIARV DAVFDKFKKL KPGDMVDDVD
LWREMQDRYG DYFDGCMGAE AIKKRLQSLD LETISKELRE EIKDASEQRK TKALKRLKVV
NAFLTTGNKP EAMVLDVIPV IPPDLRPMVQ LDGGRFATSD LNDLYRRVIN RNNRLKRLIE
LGAPEIMLNN EKRMLQEAVD SLFDNGRRGR PVTGASNRPL KSLSDMLKGK QGRFRQNLLG
KRVDYSGRSV IVVGPSLRMH QCGLPKPMAL ELFKPFVIKR LVDLNYAQNM KSAKRLVDRG
DAEVWGVLEE VISEHPVLLN RAPTLHRLGI QAFEPILVEG KAIHLPPLAC AAFNADFDGD
QMAVHLPLSA EAQAEARSLM MASDNILKPA DGHTVTMPSQ DMILGLYYLS TVLEGVKGQG
RVFSSLEEAE MALDRHEIDM QAKVLIRLPE SFVLPKNWEP GEVKVLDPRE GEDEVVKEER
FHDGTVLFAT SYGRILFNET LPTDYPFVNE QVAKGRLSKI VDDIAMRYST QQVAATLDAL
KDLGFTRAPW SGVSFAFSDV NEPPERDEKI AEYEAKADKV NANYEMGLLT EEARRQELID
LWTECTAEVS KEVEEKFDPT SNLAIIVQSG ARGNMMQINQ IAGMRGLVAN PKGEIIPRPV
KSNYRDGLSV LEYFISQHGA RKGLADTALR TAESGYLTRR LVDVSQDVIV REEDCGTKAG
LPIRVAERDN DGNLVLVKAA DGGPYSRLLA ADVIDPADGQ TVLYKRDDAL SMDVLNDLVA
HGVEEVKCRS VLTCESKRGV CAKCYGWSLA TNKLVDVGET VGIVAAQSIG EPGTQLTLRS
FHSGGVAAAS DITQGLPRVT ELFEARTPKG EAPITEFAGS IKIVENDRGR QIILTPDADS
GAPKEDGVIK PITYQVSKRV PLKVADGDHI KVGTQLVEGS VDPKKILTIL GKRAAQVNIV
EEVHTVYRSQ GVDIHDKHIE VIVHQMTRRV TIIDSGDTDL LPGELVDNAR FREINRNIVK
NGGRPAVGRP ALMGITKASL ATDSWLSAAS FQETTRVLTE AALSEKVDDL KGLKENVIIG
KLIPAGTGLA RYRNAVVEPD KAIRDTIYPN FGLGGDGDLG DASFSDADLS DLNFSNLEFG
DLKLGDDFNP DDFYSDQGGQ PDIEE
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