Gene BLD_0938 details

Gene Information

• Locus tag: BLD_0938
• Symbol: smpB
• ID: 6363072
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: -
• Start bp: 1080560
• End bp: 1081036
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642680106
• Product: SsrA-binding protein
• Protein accession: YP_001954882
• Protein GI: 189439801
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0538951
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCAAGG AAACCGGTGA GAAACTCATC GTCCAGAACA AGAAGGCCCG GCATGACTAT 
GCCATCGAAG ACAAGTATGA GGCAGGGCTG GCCCTGACCG GCACCGAGGT CAAGTCGTTG 
CGCGAAGGCC GCGCATCGCT GTCCGAGGCG TTCATCTCCA TCGACCGCCG CGGCGAAATG 
TGGCTGGAGG GCGCGAACAT CCCCGAATAC CTGAACGGCA CATGGAACAA CCATGCGCCC 
AAGCGCAAGC GCAAGCTGCT GCTGCACCGA CTGCAGATCA CCAAGCTCGC CCGCGGCATC 
GAAGCCAAGG GATACACGAT TGTGCCGCTG AGCCTGTACT TCAAGGACGG TCGCGTCAAG 
GCGGAGATCG CGCTGGCCCG AGGCAAGAAG GAATTCGACA AGCGCCAGGC CCTGCGCGAA 
GAGCAGGACA AGCGCGAAGC CCTACGCGCC ATGCGCTACG CCAACATGCG CCACTAG 

 

Protein sequence

MPKETGEKLI VQNKKARHDY AIEDKYEAGL ALTGTEVKSL REGRASLSEA FISIDRRGEM 
WLEGANIPEY LNGTWNNHAP KRKRKLLLHR LQITKLARGI EAKGYTIVPL SLYFKDGRVK 
AEIALARGKK EFDKRQALRE EQDKREALRA MRYANMRH