| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0363 |
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| Symbol | virD4 |
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| ID | 6363649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 438521 |
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| End bp | 440329 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642679513 |
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| Product | type IV secretory pathway VirD4 component |
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| Protein accession | YP_001954307 |
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| Protein GI | 189439226 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.397437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCCGACG TCGATCCGAA ACTGCAATCG AACCGAGTGA AGGATCTGGG CGGCACGGTC
CGTCCCAGCC GCAAGATCGA ACTGGCGATC ATCATCGCGG TGTCCCTGAT CCTCACGACG
TTCGCCCTCG TGTGCTCCCA TGCGGGGCAT CCCTTCCAGA TCTTCGCGCT CATGTACCTG
GTCTCCGGCC AATGGTCGCT GACCGCAGGC CAGTGGGCGC TGGCCGTGGC CGTGCTCGTC
GTACTGGCCG TGGTGTGCGG CGTGGGCGCG TGGCTGATCG CCAGCAAGGC CGTGCCGTGG
GCAACCGGTG CCAAGGCACG CACCCGCGTG GACGTGTACG CGCCGGCGAT GGGCCATGGC
GAGGCCGTGG AGAAGGTGAC GCGCCAGCGC GCCGAGGCCA TGGCGTCAAG GCTCATAGAA
GCGGACCACT GGCGCAAGGG CATGTCGCCG GGATATCCGC TGGGGCTCAA CATCGTGGAC
AACACGTCGA TGTACACCAG CTGGGAGGAC ATGGCTATCG TTCTGGCGGG CCCTCGTTCC
GGCAAGTCCC TGTGCTACGC GATCCCGGCC GTGCTCTCGG CACCGGGCCC GTGCCTGGCG
ACCTCGAACA AGGGCGATAT CCTCGACGTG ACCGCCCCGA TCCGCAGGCT CGACCATCCG
AACGGCGAAA TATGGACGTT CGACCCCGAA CGCATCGCGG ACCCGAACCG GAAGAGCGCG
CCGTGGGTGT GGGACCTGAT CGCCTCGGTG CAGTCCATCG CCGACGCGAA ACGCATCGCC
GACTGCTGGC GTTACGCCTC GGGCCAGCCG CAGACCGGCG GCGACGACTT CTTCCCCGGC
ACCGCCGCCC AGCAGCTCGC CGACTACCTG TTCGCCGCGC ATCTGGGAGG CCGTTCCGTG
TCCGACGTGT TCAGGTGGTG CTCCAACGAG CGCGACACGT CGCCGGCCGA CATCCTGAGC
GAATACCCGC GCTACGCGGG CATCGCCTCG CGTGTGTCCA GCGTGATCGC GCTGACGCCG
GAAACCCGAA GCGGCGTGTT CGGCAGCCTT CAGACCATGG TCGCGTTCCT CGCGGACCCC
GAGATCATCG ACTGGATCGA CCCGCACCGG GATACGAATG GGAACATCGA TGAAAGGCGT
GGTCTGTTCG ATCCCTACGA GTTCGCCACG AGCGAGGACA CCCTGTACCT GCTTTCCGCC
CAGGGCCGGC CCTCGACCGC GTTGACCGCG AGCCTGACGG CGGTGGTGGC GTTCACCGCG
TTCCAACGCG CCCAATCCGA GTTCACCGGC AACAACCGCC GTCTGCCGGT CCCGTTGTGC
TGCGTGCTGG ACGAGGCCGC GAACATCTGC CGCTGGCCCG AACTGGCGGA CGTGTACTCG
TATTTCGGTT CGGCGGGCAT CCCGATCATG ACGATCTGGC AGAACCCCGA CCAGGGCAGG
GCCGCGTTCG GCGAGACGAA CTTCGGCTCG CTGTTCAACA ACGCGAACAT CACCGTGTAT
CTGGGCGGCA TCAAGGACGC GAAGTTCCTC GGCGAGATCA GCCAGCTGGT GGGCCAGAGG
GAGATCGTGC GAGGCAGCGT CAACATCGAC GGCAACGGCC GGCGCAGCGT GAACAACTCG
ATCCAGAAGG AGAACATCCT CGACGTTTCC GACCTGACCG AATGGCCCGT CGGCCGCGCG
CTGCTGCTCG CATCCCAATC CCGGGCGCAG ATCGTCAAGA CCCTGCCATG GACGGGCAAC
AGGCAATGGG CCGACGCCCT GGCGCAGGCC AAGGCGAAAG CCCGAGAAGA GCAGAGAAAG
GCCGCATAA
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| Protein sequence | MADVDPKLQS NRVKDLGGTV RPSRKIELAI IIAVSLILTT FALVCSHAGH PFQIFALMYL
VSGQWSLTAG QWALAVAVLV VLAVVCGVGA WLIASKAVPW ATGAKARTRV DVYAPAMGHG
EAVEKVTRQR AEAMASRLIE ADHWRKGMSP GYPLGLNIVD NTSMYTSWED MAIVLAGPRS
GKSLCYAIPA VLSAPGPCLA TSNKGDILDV TAPIRRLDHP NGEIWTFDPE RIADPNRKSA
PWVWDLIASV QSIADAKRIA DCWRYASGQP QTGGDDFFPG TAAQQLADYL FAAHLGGRSV
SDVFRWCSNE RDTSPADILS EYPRYAGIAS RVSSVIALTP ETRSGVFGSL QTMVAFLADP
EIIDWIDPHR DTNGNIDERR GLFDPYEFAT SEDTLYLLSA QGRPSTALTA SLTAVVAFTA
FQRAQSEFTG NNRRLPVPLC CVLDEAANIC RWPELADVYS YFGSAGIPIM TIWQNPDQGR
AAFGETNFGS LFNNANITVY LGGIKDAKFL GEISQLVGQR EIVRGSVNID GNGRRSVNNS
IQKENILDVS DLTEWPVGRA LLLASQSRAQ IVKTLPWTGN RQWADALAQA KAKAREEQRK
AA
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