| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0261 |
|---|
| Symbol | trmA |
|---|
| ID | 6364563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 326540 |
|---|
| End bp | 327808 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642679408 |
|---|
| Product | SAM-dependent methyltransferase |
|---|
| Protein accession | YP_001954205 |
|---|
| Protein GI | 189439124 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCTG AAGTTCGTAT CGAACGATAC GCCGACCAAG GCCGCTGCGT GGCCCATATC
GACGGTCGTG TGGTGTTCGT CCGCTTCGCC TTGCCCGACG AACTCGTGCG AGTCGAACTT
GACGAGCCCC ACGACCGGGA CGACCGGTTC TGGACCGGCG AAGTCGTCGA GGTTCTCGAG
CCGTCCGAAG ACCGAATCAC CCCGGCATGG CCACTTGCCG GTCCCTTGGC GATGGGCGGG
GGAGTGGGCG GCGCGGATCT CGTGCACGTC TCTTTGCCCG GCCAGCTCAA GTGGAAGGCC
ATCACCGTCT CCGAACAGAT GAGCCGACTC GGCCATATCG ACGTGGCCGT TCCCATCGAG
CGCATGCCCG GCGACAAGGC AGCCGGCGGC CTCAATTGGC GTACCCGCAT CGAAATGATT
GCCGACGACA ACGGCATGCC ATCCATGCGC CGGCGCGGCA CACACAACCG CGTGGCCATC
GACACCATGC CGCTTGCCAC GCGCACGCTG CTGGACGTCG CCAAGCGCGA ACACGTGTGG
GAGGGCGGCT TTGAACCCGG CTCCCAGATT CGTCTTTCCG TGCCCGAACC GCGCGGCGAG
ATCGTCGATA CCGCGGCAGC AGACGACAAT TACGCCGTAC TTGTGGACGG CGAACTGCGC
GCCGGCTCCC AGCTGCTCAC CGAACAGGTG ACCATCAACG GCACGACCTT CGACTATCAG
GTTGACGCCA ACGGTTTCTG GCAAGTGCAT CGCCAAGCGC CGATCGCCCT CGGTACGCAC
GTGATCAACC TGGTCAACGG GCAGCTGCAG TCAGCGGCGG ACGCCGTAAT CTGGGATTTG
TATTCCGGTT CCGGCCTGTT CACCCTGCCG CTGGCCACAA TGACCGGTGA ACGCACCCGC
ATGCTCAGCG TTGAAGGCGC GCGTGTGGCC GTCAAGAACG CCCAGCGCAA TCTGCGCGCC
ATGAACCTGA ACGACGTGGA CGCCCGCGCG GGTGACGTCT CGCGCACGCT GGACCATGTG
CCGGCGCATC TGGCCAAGCC GGATGTCGTA GTGCTTGATC CGCCGCGTGC CGGTGCTCGT
GCCAAGGTCT GCCGCCAGAT TGCCGCGGCC GGCGCATCCA GCGTGGTCTA CATCGCCTGT
GATCCCACCA GCCTCGCACG CGACACCGCG ACACTCATCG GCGAAGGCTA CGAACTCAAA
GACATCCGTG CCTTCGACAT CTACCCGATG ACCCACCACG TCGAGACGGT GGTCCTGTTT
ACCCGCTGA
|
|---|
| Protein sequence | MQAEVRIERY ADQGRCVAHI DGRVVFVRFA LPDELVRVEL DEPHDRDDRF WTGEVVEVLE
PSEDRITPAW PLAGPLAMGG GVGGADLVHV SLPGQLKWKA ITVSEQMSRL GHIDVAVPIE
RMPGDKAAGG LNWRTRIEMI ADDNGMPSMR RRGTHNRVAI DTMPLATRTL LDVAKREHVW
EGGFEPGSQI RLSVPEPRGE IVDTAAADDN YAVLVDGELR AGSQLLTEQV TINGTTFDYQ
VDANGFWQVH RQAPIALGTH VINLVNGQLQ SAADAVIWDL YSGSGLFTLP LATMTGERTR
MLSVEGARVA VKNAQRNLRA MNLNDVDARA GDVSRTLDHV PAHLAKPDVV VLDPPRAGAR
AKVCRQIAAA GASSVVYIAC DPTSLARDTA TLIGEGYELK DIRAFDIYPM THHVETVVLF
TR
|
|---|
| |