| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0235 |
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| Symbol | xerC1 |
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| ID | 6364105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 295360 |
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| End bp | 296286 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642679382 |
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| Product | Integrase |
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| Protein accession | YP_001954179 |
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| Protein GI | 189439098 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.386202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCAACG GATTCACCAG ACTCACCGAG CAGTTCCTCG TCCACATCGG CGTGGAGCGA
GGGCTCGCCA CGGCCACCGT CACCGCCTAC GAATCCGACA TCGCCAAATA CATTGATTGG
CTCGAAACCC GCGGCATCCA CGAACCGGAC GCCATAACCA AACAAGACGT CGAAGACTAC
ATCGCCGCCC TTGACCAGGC GGGGGAGTCC GCCCGCTCCA AAGCCCGAAG ACTGGCCTCG
ATCCACGAAT TCCACCGTTT CGCGCTCGGT CAGCACGCGG TGACGGCGGA TGTTTCGGCC
GCAGTCAAGG CGCCCAAAGG CGCCAGCACC CTGCCCGACG TACTCACCGT GGACGAGGTA
ACCCGTCTGC TCGACGCGGC GGCAGTCGGC GGCTCAACCG ATCCGGTGGT ATTACGGGAC
AAGGCCCTGC TCGAATTCAT GTACGCCACC GGCTGCCGCG TCTCGGAAGC CACCGGTGCG
AATCTGGACG ACATCGACCT GGACGAGCAC ATCGCGCGAC TCATGGGCAA GGGCTCCAAG
CAGCGGCTTG TGCCATTGGG CAGTTACGCA TGCCGGGCCA TCACCGCATA CCTCAATGCG
GGGCGTGGCG AGTTGGAACA GCGCTCCAGC GCCAAGATTC CCGAGAGGCG CGCACTGTTT
CTCAACAAAC GCGGCAAGCG CATCTCGCGG CAATCGGTAT GGGAAATCGT CAAAGCAACC
GGGGAGCGGG CCGGCATCAC CAAACCACTC CATCCGCACA CCTTGCGCCA TTCCTTTGCC
ACGCACCTGA TCCAAGGCGG CGCGGACGTG CGCACCGTGC AGGAACTGCT CGGGCACGCC
AGCGTGACCA CCACGCAGAT CTACACGCAC GTAAGCCCTG AAACCCTGAT CGAAACGTAT
CTGACCTCAC ATCCCAGAGC GCGGTGA
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| Protein sequence | MTNGFTRLTE QFLVHIGVER GLATATVTAY ESDIAKYIDW LETRGIHEPD AITKQDVEDY
IAALDQAGES ARSKARRLAS IHEFHRFALG QHAVTADVSA AVKAPKGAST LPDVLTVDEV
TRLLDAAAVG GSTDPVVLRD KALLEFMYAT GCRVSEATGA NLDDIDLDEH IARLMGKGSK
QRLVPLGSYA CRAITAYLNA GRGELEQRSS AKIPERRALF LNKRGKRISR QSVWEIVKAT
GERAGITKPL HPHTLRHSFA THLIQGGADV RTVQELLGHA SVTTTQIYTH VSPETLIETY
LTSHPRAR
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