| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0214 |
|---|
| Symbol | appF1 |
|---|
| ID | 6362993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 270493 |
|---|
| End bp | 272202 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642679361 |
|---|
| Product | peptide ABC transporter ATPase |
|---|
| Protein accession | YP_001954158 |
|---|
| Protein GI | 189439077 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.364148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA ACAACAAGAA TCTCGCCGAT ATCAAGGACC TGTCCGTCTC CTTCATGACC
GACGCCGGCT CCATCAAGGC CGTCGAGGAC GTGAACTTCA CCATTCCGCG CAAGACCGTG
GTCGGCGTGG TCGGCGAATC CGGTTCCGGC AAGTCCGTGA CCGCGCGCTC CATCATCAAG
CTGCTGCCGG AGACGGCCAC CACCTCCGGT GCCGTCTACC TGTCCAAGCG CGATGGCTCC
GATTCGCTGG ACGTGCTCTC CCTGAGCGGC GAACAGCTGC GCGAAGTGCG TGGTTCCGAG
GCCGCGATGG TGTTCCAGGA GCCCAATTCG GTGCTGAACC CGGTGTACAC CATCGGCTGG
CAGATTGAAG AGGGCCTGCG CGCCCACGGC ATGAAGGACA AGAAGGAACT GCGCGCCAAG
GCCATCAACA TCCTGAAGAA GGTCGGCATC CCGGATGCCG AAACCCGCGT GGACTACTAC
CCGCACCAGT TCTCCGGCGG CCAGAAGCAG CGCATCGTCA TCGCCATGGC GTTGGTGCTG
AACCCCGGTC TGATTCTGGC CGACGAGCCT ACCACTGCCC TCGACGTGAC CGTGCAAGCC
GAAATTCTCG ACCTGCTGCG CCTCGCCCGT GACGAGTTCG ACGCCTCCGT GCTCATCATC
ACCCACAACA TGGGCGTGAT CGCGGACATC GCCGACCAGG TGGTCGTCAT GTACCGCGGC
CACGTGGTCG AGCAGGGCGA CGTGGAGCAG ATCTTCTACC ATCCGAAGGA CGACTACACC
AAGCGACTGC TGGGTGCCGT GCCGCGCATC GGTCAGAAGC TGGTCGTGCG CGACCGCGAG
GGCAAACCGA TCGAGCGCAA GGCCGATTGG CGCGAACAGC CGATCGCCGT CGAGGCCAAG
AACCTGACCA TCACGTACCC GGGCCATCTC ATGCAGCCCG ACTTCAAGGC CGTGGACGGC
GCGAACTTCA CCATCCACCG CTCCGAAGTG CTGGGCCTGG TGGGCGAGTC CGGTTCCGGC
AAGTCCACCA CCGGCCGTGC CATCGCCGGC CTGCAGAAGG TGTCCGGCGG CTCCCTGAAC
GTGCTCGGCA TCGAGATGAA CGGCGTCAAG GAGCGTGACT TCAAGCCCAA GCGCGCGGAC
ATTGGTTTCG TGTTCCAGGA TCCGGGCTCC TCGTTCAACC CGCTGATGAC CATCGCGGAG
AATGTGGCCG AGCCGCTGCT CGTGCACCAC AAGTACGGTT CCGTGGCCGA TGCCAAGAAC
TATGTGGGCG ACCTGCTGGA GATGGTCCAG CTGCCGCGCG CCTACATGAA CCGTTTCCCG
CATGAGCTGT CCGGCGGCCA GCGCCAGAGG GCGTCTTTGG CGCGTGGTTT GGCGTTGAAG
CCGTCGCTGC TGATCGCCGA TGAGCCGACT TCTGCATTGG ACGTGTCGGT GCAGGCCAAG
GTGTTGGAGC TGTTCAAGCG ACTGCAGGCG GAAATCGGCT TCGCGTGCCT GTTCATCACC
CATGATTTGG CGGTGGTCGA TATGCTTGCC GACCGCATCA TGGTGATGCA TAAGGGCCAG
ATCGTGGAGC ACGGCGATGC CGACCAGATT ATGCAGCACC CGGAGAACCC GTACACCAAG
AAGCTGCTGG CCTCCCTGCC CGTGCCCGAC CCGCGCGAAC AGCAGCAACA CCGCGCCCAC
CTCCACGAGC TCCTAGCCCA AGAGGCGTAA
|
|---|
| Protein sequence | MSENNKNLAD IKDLSVSFMT DAGSIKAVED VNFTIPRKTV VGVVGESGSG KSVTARSIIK
LLPETATTSG AVYLSKRDGS DSLDVLSLSG EQLREVRGSE AAMVFQEPNS VLNPVYTIGW
QIEEGLRAHG MKDKKELRAK AINILKKVGI PDAETRVDYY PHQFSGGQKQ RIVIAMALVL
NPGLILADEP TTALDVTVQA EILDLLRLAR DEFDASVLII THNMGVIADI ADQVVVMYRG
HVVEQGDVEQ IFYHPKDDYT KRLLGAVPRI GQKLVVRDRE GKPIERKADW REQPIAVEAK
NLTITYPGHL MQPDFKAVDG ANFTIHRSEV LGLVGESGSG KSTTGRAIAG LQKVSGGSLN
VLGIEMNGVK ERDFKPKRAD IGFVFQDPGS SFNPLMTIAE NVAEPLLVHH KYGSVADAKN
YVGDLLEMVQ LPRAYMNRFP HELSGGQRQR ASLARGLALK PSLLIADEPT SALDVSVQAK
VLELFKRLQA EIGFACLFIT HDLAVVDMLA DRIMVMHKGQ IVEHGDADQI MQHPENPYTK
KLLASLPVPD PREQQQHRAH LHELLAQEA
|
|---|
| |