| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0162 |
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| Symbol | hrpA |
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| ID | 6363044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 202309 |
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| End bp | 206445 |
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| Gene Length | 4137 bp |
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| Protein Length | 1378 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642679308 |
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| Product | HrpA-like helicase |
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| Protein accession | YP_001954106 |
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| Protein GI | 189439025 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATATG AGTATCCCGC AGAACTTCCC GTATCTGCCG CGCGTGATGA GATAGCCAGC
GCGGTCAAAC GTTCCCAAGT CGTTATTGTG TCCGGCCAGA CCGGTTCGGG CAAAACCACA
CAGCTGCCGA AAATCCTGCT TGAGCTTGGC CGTGGCACGC ACGGCAAGCA GATCGTGCAC
ACCCAGCCTC GCCGTATCGC CGCACGCACG GTGGCCGAAC GTATCGCCTC GGAGATGGGC
GTGAAGCTCG GTGACGAGGT CGGCTATCAG GTGCGTTTCA CCGACGAAAG CTCGCCCAGC
ACACGATTGA GGGTCGTGAC CGACGGTATT CTGCTCGCCC AGATCCAGCG CGATCCGAAA
CTCACCCGAT ACGATACGAT CATCATCGAC GAGGCGCATG AGCGCAGTCT TAACATCGAC
TTTCTGCTCG GCTATCTGAC GGCACTGCTG CCTCAGCGCC GCGATCTGAA GCTCATCATT
ACCTCCGCGA CCATCGATTC GGTCAAGTTC CAGGAGCATT TCGAGCACGC CTTGCATGAG
AAGGTGCCGG TAATCGAGGT TTCCGGCCGC ACCTTCCCCG TGCAGGTGGT CTACGAGCCG
CTTGGCACCG CGCCCGCGTT GATGCGCGAA GTGCCGGGAT TCGCGGTGGG CGCCCGCCCC
GGCGACGCCG ATTACGACGA GCTGGCCAGC GCCATCGCGG AATCCGATTC CGACCGGCCC
CGCGGCCGGT CCGGTGCCTC CTATGCCGAT GACGGTATCA CCGATATGCC TACCGCCGTG
GCTCGAGCCT GCGCCGAGCT GGTGATTCAC TCCTCCCACG AGCGCGGTCC CCGCGATATT
CTGGTCTTCG CCTCCGGCGA GCGCGACATC CACGAGTTCG AGGCCGCACT GCGGCATCAT
TACGGCCCGC GCGCCGACGA CATGCGCCGG CCGGATGCCA TCGAGATCAT GCCGCTGTTC
GCGCGACTGT CCGCCGCCGA CCAGCATAAG GTGTTTGAAT CGCACCTTCA CCAGCGCATC
GTCATTGCCA CCAATGTGGC TGAGACCTCG CTGACCGTGC CCGGTATCCG GTATGTGGTG
GACCCCGGTT CCGCCCGTAT CTCCCGGTAT TCGAAGACCG CAAAGGTTCA GCGTCTGCCG
ATCGAGCCGA TCAGCCAGGC CAGTGCCGAC CAGAGGTCCG GCCGATGCGG CCGCGTGGCC
GACGGTATCG CGATCCGCCT GTATTCGCGT GAGGATTACG AGACCCGACC GCGCTTCACC
GAGCCGGAAA TCCTGCGTAC CTCGCTGGGT GCCGTGGTAC TCCACATGCT GTCGGTGGGC
GTGGCCCGCA CGGCCGAGGA CGTCACGAAC TTCGGGTTCA TCGATCCGCC GGATATGAAG
GCCGTGTCGG ACGGTTTCAA TGAGCTCACC GAGCTCAAGG CCATCGGCCG CAAGCGCGGC
GAGGTGACGC TCACCCATAC CGGCCGTCAG CTGGCGCGCA TCCCCATCGA CGTGCGTCTG
GGACGTATGG TTATCGAGGC CGCGAAAACC GGTTCGCCGA ATCTTCTGGC CCAGGTGCTC
GTGGTCGTGG CGTTCCTGAG CTTGCAGGAC CCACGTGAAC GCCCGGACGA CAAGCGTGAG
GATGCCGACC GCATCCACAA CCGGTATGCG GATGAGACTT CCGACTTCCT GACGGCCCTG
AATATCTGGG ACCGCGTGTT CCAGGCGGAC GGCGACCCGA GCAACAACGC GCTGCGCCGT
ATCTGCAAAA CCGAGTATTT CAGCTGGCTG AGGATGCGCC AGTGGAAAGA TCTCGTCTCC
CAGCTACGCC AGATGTGCAA GGAGCTGAAG TTCAAGGTCG GCGACCCGCT GCCCGCCTCC
CGCCCAGGCT TGGAGATCCG CCAGCTGCCG TTGAATCAGC AGGCCGCGCA TTCGCTGTGC
TGCGCGTGGG ATGCGGACGG CATCCACAAG TCGATGCTCG CCGGATTGCT GTCGATGATG
GGCATGCAGG TGGTGCGCGA GCCCAAGGCC TCCGATTTCG CGGGGCTGAC CGGTTCGGCG
CGCGCCCGTG CGATGAAACG CGCCCAGAAG CAGTCGAAGA ACGATTATCA GGGCGCACGC
GGCACCCGTT TCGCCCTGTT CCCCGCTTCC GCCGTGGCCA AGAAGACCCC GTCATGGGTG
ATGAGCACCG AACTGGTGGA AACCTCTCGC CTGTGGGCCC GCTATTCGGC GGCCATCGAC
CCCGCGTGGG CCGAACCGTT GGCCGGCCAA TTGACCCGCA CCACGTATGC GGAGCCGCAC
TGGTCGGGTT CGCGTGGCTC GGCTGTGGCC ACCGCGCGCG TGCTGCTGTA TGGTCTGCCG
ATCGTACAGG ACCGTGCCGT GCAGTGGGGA CGCATCAATC CACTTGAGGC GCGCGACTTC
CTGATTCGCC AGGGTCTGGT CGAGGGCGAT ATTCAGCAGC GTTTCAGTTA CGACGACTTC
GTGGGCAAAA ACCGCGACAT TCTCGAGGAT GCCGCCGATG ATGCGAGCCG CACCCGCCAG
CTGGCGGATA CCGTGTCCGA CGAGGATCTG TTCGACTTCT ACAACGCGGT CATTCCCAAC
GATGTGACCA GCGTGTCCGA TCTGGCGAAA TGGTGGAAGT CCGAGCATGA CCGTCAGCCG
AATCTGCTTG ATTTCGACCC GGCCAAGGTG GAGCGTCTGG CATCCAGCGA TTCGGTGAGT
CTGGACGATT ACCCCGACCA TTGGCATACG ACCGGATCGG ACGGCCAACC CATCGACCTG
CGTCTGAGCT ACGTGTACGA TCCGGCCGAC CCGGCCGACG GCGTCACCGT GCATGTGCCG
TTGAAGGCGC TCTCGCGTAT CACGCCCGAC CAGTTCACAT GGAATGTGCC GGGTCTGTTG
GATGAGCTGA TCCTGTCGAT GATCAAGGCG CTACCCAAGC AGCTGCGCGT CCAGTTCGTG
CCAGCCCCGG ATGCCGCGCG TGCGATTCGT GACTGGATCG ACGAGCATTA CCCGGATCTG
CCGGGCTCGG GCTCGCAGCA GAAGCCGAAT CTGCCGCCGG TGGATGAGGA TGGCACGACC
GTTGGCTGGC CCGATCTGGC ACATGTGTTC ACCAAGGCGG CCATCGCCAC CAAGGGTGCG
CAGATTCATC CCGAAGTGTT GGGGCCGGAA CTGGTCGAGC GTCTTTCCCC GTATCTCAGG
GTCACGTTCT CGGTGGAGCA GCAACTGCCG GCCGGCAAGC ACCCTCGTGG ACGCCGGCAT
GCGCGCGGCC CCATCAAGGT GCTGGGTGTG TCCAAGGATC TGAAGGCGCT GCAACGCAAG
TTCGCCGCGC AGGCGGAGGC GTCGGCCCGT CAAATGGTCA AGAAGCAGGC CGATCAGGCT
GGAGAACAGG GCAAGCTGGT CAGTCAGGCG AACCTGTTGC ATAAGGCGGG TGCCACCACC
GAGTCCCGGG CCACGATGCT CTGGCGTGGC GCATTGGATG CGCTGCGGTT GCCGGCCGAA
CGCATTTCGT CGCGCTGGCT GGGTACCGAG GCGTTGATGC TGGCTTCTGC TCCGTACAAG
TCCACCAAGG ATCTGGTCGA AGACCTGCAG CTGGCCACGG TCAAACGGCT GATGCCGAAT
GTCGACAGGC TCTCGGACGA TGAGGCGTTG GCCAATGCGG TGCTCGATGT GCGCGAAGTG
TACGAGGACA CCGTCTATCA GGTGGCGCAT GACGTGATCG CCGTGCTCAA GGCTTATGCC
GAAGTCGACA AGGCCACTGG CGGCAAGGCT GATCTGCCGA TGCTTTCGGT GTTGCAGTCG
ATTCGCGACC ATATCGCCAC GCTCGTCTAC CCCGGATTCA TCGGGCGCAC TCCCCCGGAT
GCGCTGAAGT CGTTGAGCCG ATATTTGAGA GCCGATCTGA GCCGACTCAA TAAGGCGAAA
ACCGATAAGA ACCGTGACGT CAAGTGGGCT TGGCAGGCCG ACGAGGCCCG TCAGGTGGTA
GATAAGGCGT TGGCCCGTGC CAAGGCGGAG CCGGCCGGCC CGAAGCATGA GGCATTGATG
AAGCAGGCCG AACAGGCCCG TTGGATGCTT GAAGAGTTCT ACGTGTCCCT ATGGGCGCAG
GAGCTTGGCA CCAAGGGGCC GGCTTCGCTC AACCGTATCA AGAAAGCGCT GGCGTGA
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| Protein sequence | MKYEYPAELP VSAARDEIAS AVKRSQVVIV SGQTGSGKTT QLPKILLELG RGTHGKQIVH
TQPRRIAART VAERIASEMG VKLGDEVGYQ VRFTDESSPS TRLRVVTDGI LLAQIQRDPK
LTRYDTIIID EAHERSLNID FLLGYLTALL PQRRDLKLII TSATIDSVKF QEHFEHALHE
KVPVIEVSGR TFPVQVVYEP LGTAPALMRE VPGFAVGARP GDADYDELAS AIAESDSDRP
RGRSGASYAD DGITDMPTAV ARACAELVIH SSHERGPRDI LVFASGERDI HEFEAALRHH
YGPRADDMRR PDAIEIMPLF ARLSAADQHK VFESHLHQRI VIATNVAETS LTVPGIRYVV
DPGSARISRY SKTAKVQRLP IEPISQASAD QRSGRCGRVA DGIAIRLYSR EDYETRPRFT
EPEILRTSLG AVVLHMLSVG VARTAEDVTN FGFIDPPDMK AVSDGFNELT ELKAIGRKRG
EVTLTHTGRQ LARIPIDVRL GRMVIEAAKT GSPNLLAQVL VVVAFLSLQD PRERPDDKRE
DADRIHNRYA DETSDFLTAL NIWDRVFQAD GDPSNNALRR ICKTEYFSWL RMRQWKDLVS
QLRQMCKELK FKVGDPLPAS RPGLEIRQLP LNQQAAHSLC CAWDADGIHK SMLAGLLSMM
GMQVVREPKA SDFAGLTGSA RARAMKRAQK QSKNDYQGAR GTRFALFPAS AVAKKTPSWV
MSTELVETSR LWARYSAAID PAWAEPLAGQ LTRTTYAEPH WSGSRGSAVA TARVLLYGLP
IVQDRAVQWG RINPLEARDF LIRQGLVEGD IQQRFSYDDF VGKNRDILED AADDASRTRQ
LADTVSDEDL FDFYNAVIPN DVTSVSDLAK WWKSEHDRQP NLLDFDPAKV ERLASSDSVS
LDDYPDHWHT TGSDGQPIDL RLSYVYDPAD PADGVTVHVP LKALSRITPD QFTWNVPGLL
DELILSMIKA LPKQLRVQFV PAPDAARAIR DWIDEHYPDL PGSGSQQKPN LPPVDEDGTT
VGWPDLAHVF TKAAIATKGA QIHPEVLGPE LVERLSPYLR VTFSVEQQLP AGKHPRGRRH
ARGPIKVLGV SKDLKALQRK FAAQAEASAR QMVKKQADQA GEQGKLVSQA NLLHKAGATT
ESRATMLWRG ALDALRLPAE RISSRWLGTE ALMLASAPYK STKDLVEDLQ LATVKRLMPN
VDRLSDDEAL ANAVLDVREV YEDTVYQVAH DVIAVLKAYA EVDKATGGKA DLPMLSVLQS
IRDHIATLVY PGFIGRTPPD ALKSLSRYLR ADLSRLNKAK TDKNRDVKWA WQADEARQVV
DKALARAKAE PAGPKHEALM KQAEQARWML EEFYVSLWAQ ELGTKGPASL NRIKKALA
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