| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0116 |
|---|
| Symbol | ispG |
|---|
| ID | 6362710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 136829 |
|---|
| End bp | 138049 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642679256 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_001954060 |
|---|
| Protein GI | 189438979 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCT TGAATACGGA AAATCCCATC GAAAAGCCGT TCCGCAAAAC CGGTGATCCG
GTCGACCTGA CCAGCGAATC GCCCTTGCAC CCGCGCCGCA AGTCCCGCCG CATCATGGTG
GGCCCGGTGC CGGTGGGCGG GGGCGCGCCC ATCTCCGTGC AGTCGATGAC CAACACGCTC
ACGGCCAACG TACCTGCCAC GTTGCAGCAG ATCGCCGAAC TGACCGCCGC CGGCTGCGAC
ATCGTGCGCG TGGCCGTGCC GAGTCAGGAC GATGCCGACG CACTGCCGGA AATCTGCCGC
AAATCGCCGA TTCCGGTCAT CGCCGATATC CACTTCCAGT CCAAATACGT GTTCCAGGCC
ATCGACGCCG GCTGCGCGGC CGTGCGCGTG AACCCCGGCA ACATCCGTAA GTTCGACGAA
GTCGGCCCGG ACATCTGCAA GGCCGCCACC GACGCGGGCA TCTCGCTGCG TATCGGTGTG
AACGCCGGCT CGCTGGACAA GGAACTCTAC GCCAAATACG GTGGCCCGAC TCCGGAAGCA
TTGGTGGCCT CTGCCTTGAA GGAAGCGCAC ATGTTCGAGG ACGTCGGCTT CCACGATTTC
AAGATCTCCG TCAAACACCA TGACGTCATC ACCATGGTCG AAACGTACCG ACTGCTCGCT
TCCAAGGGCG ATTGGCCGCT GCACCTCGGC GTCACCGAGG CCGGCCCCGC TTGGCAAGGC
ACCATCAAAT CCTGCCTGGC GTTCGGTGCG CTCTTGGCCG AGGGCATTGG CGACACGATT
CGCGTGTCTC TCTCCGCGCC GCCGGCCGAA GAGGTCAAGG TGGGTTGCAA ACTCTTGGAA
TACATGGGAT TGCGCCCCCG CAAGTTCGAC ATCATCTCCT GCCCGAGCTG CGGCCGCGCC
CAAGTGGATG TGATCCAGCT CGCCTCCGCC GTCACCGAAG GCCTGAAGGA CGTGACCGCG
CCGATCCGAG TGGCCGTCAT GGGCTGCATC GTCAACGGTC CGGGCGAGGC ACGCGAAGCC
GACCTCGGCG TGGCCTCCGG CAATGGCAAG GGCCAGATCT TCATCAAGGG CAAGGTCATC
AAGACCGTGC CCGAAGACCA GATCGTCGAC ACGCTGCTCA CCATAGCGAA CGATATCGCC
GCCCAAATGG AGGCCGACGG TCAAGTCCCC GTCAATTCCA CCGGCCCGGT CGTGGTCCCA
ATCCAGCACC CCGGTCACTG A
|
|---|
| Protein sequence | MNTLNTENPI EKPFRKTGDP VDLTSESPLH PRRKSRRIMV GPVPVGGGAP ISVQSMTNTL
TANVPATLQQ IAELTAAGCD IVRVAVPSQD DADALPEICR KSPIPVIADI HFQSKYVFQA
IDAGCAAVRV NPGNIRKFDE VGPDICKAAT DAGISLRIGV NAGSLDKELY AKYGGPTPEA
LVASALKEAH MFEDVGFHDF KISVKHHDVI TMVETYRLLA SKGDWPLHLG VTEAGPAWQG
TIKSCLAFGA LLAEGIGDTI RVSLSAPPAE EVKVGCKLLE YMGLRPRKFD IISCPSCGRA
QVDVIQLASA VTEGLKDVTA PIRVAVMGCI VNGPGEAREA DLGVASGNGK GQIFIKGKVI
KTVPEDQIVD TLLTIANDIA AQMEADGQVP VNSTGPVVVP IQHPGH
|
|---|
| |