| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_3726 |
|---|
| Symbol | |
|---|
| ID | 6369558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010815 |
|---|
| Strand | - |
|---|
| Start bp | 76204 |
|---|
| End bp | 76890 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642679139 |
|---|
| Product | haloacid dehalogenase, type II |
|---|
| Protein accession | YP_001953944 |
|---|
| Protein GI | 189426768 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.000162438 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.339167 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATCA CGCTCGCATT TGATGTTTAT GGAACATTGA TCAACACCCA CGGTGTCTTG
ACGGCATTGG AAGGGCTGGT CGGTGATAGG GCAAAGGCGT TTTCGAATAC CTGGAGAGAT
AAGCAGCTGG AGTATTCGTT TCGCAAAGGT TTGATGCAGA ATTACGAAAC CTTTGCTGTC
TGTACCAGTC AGGCTCTCGA TTATACCTGC GCCTTTTATG GTGTCGATTT CAGCGATGGG
CAAAAGAAGG AGTTGATGGG TATCTATCGT GTCTTGCCTG CTTTTGCTGA CGCCAAGGAA
GGACTGGCTC AATTGAAAGA AACTGGTTTT CGGCTCTTCG CGTTTTCGAA TGGTGCGGCA
GACGCATTGG AAGTTTTGTT GAGCAATGCT GGGATACGAG AGCTGTTTTT TGGCGTTGTC
AGCGTCGATG ACATCAAAAC CTTTAAGCCA AGTCCAGCTG TCTATAGTCA TTTCCTGAGG
CAATCCGAAT CGATCGGTGG CACTGCCTGG CTGATTTCCA GTAATCCCTT TGATGTCATC
GGTTCTATTT CGGCGGGGAT GAAAGCTGCC TGGGTGCAGC GTTCTCCAGA GGCGATTTTT
GATCCTTGGG GGATTGAGCC CAATATTACT GTAACGAGCC TTATCGAGTT GAAGGAACAA
ATCACCAACT ATGAAGGAAC AGAATGA
|
|---|
| Protein sequence | MAITLAFDVY GTLINTHGVL TALEGLVGDR AKAFSNTWRD KQLEYSFRKG LMQNYETFAV
CTSQALDYTC AFYGVDFSDG QKKELMGIYR VLPAFADAKE GLAQLKETGF RLFAFSNGAA
DALEVLLSNA GIRELFFGVV SVDDIKTFKP SPAVYSHFLR QSESIGGTAW LISSNPFDVI
GSISAGMKAA WVQRSPEAIF DPWGIEPNIT VTSLIELKEQ ITNYEGTE
|
|---|
| |