| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_3595 |
|---|
| Symbol | |
|---|
| ID | 6367602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010814 |
|---|
| Strand | - |
|---|
| Start bp | 3863411 |
|---|
| End bp | 3864625 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642679011 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001953816 |
|---|
| Protein GI | 189426639 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0852698 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ATATCATCAT CGTCGCCATA TTGATTATTA CCATTGCTGC TGGAGTCTGG
TTCTTTTTCG GACGTGCCCC CAAGGTTAGC TACAAGACGG TCCCGCTTGA AAAAGGGAGC
GTTGTTGCCA CCATATCAGC CACCGGTACC GTGAATCCGG TCACCACGGT GCAGGTCGGC
TCCCAGGTCT CCGGTACCAT TCAAAAACTG CTGGTTGACT ACAATTCAAG GGTGAAACAG
GGACAGGTGA TTGCCGAGAT TGATCCGGCC CTCTTTCTGG CCCAGGTTGA GCAGGCCAGG
GGCAATTTTC TGAATGCCCA GGCCAACCTG CAGAAGGCAA AGGTCACCCT GGCCGATGCA
AAACGGACCC TTGAGCGGAA CAGGCAGCTG ATCAGTCAGG GGATTGTGGC CCAGAGCGAT
TTTGATGCCT CCCAGACTGC CTATGATTCA GCCCTGGCAG GGATCAAATC GGCTGAGGCC
GGAGTAACCC AGTACCGCGG CACCCTGATG CAGGCTGAGA CCAATCTGAA AAACTCGGTA
ATCCGTTCTC CGGTGGATGG CATTGTTATT TCACGCAGTA TTGATGTGGG CCAGACCGTG
GCTGCCTCGT TTCAGACACC GACCCTGTTC TCCATTGCCC GGGATCTGAC CAAGATGCAG
ATTGAAACCA GCGTGGATGA GGCTGATATC AGCCGTACCC GCCTGGACCA AGCCGTTACC
TTTACGGTTG ACGCCTACCC TGACCGCAGC TTCAAGGGGC GGGTTACCCA GGTCCGCTCT
GCCCCGATTA CCGTCCAGAA TGTGGTCACC TACATTGTGG TGGTGCAGGT GGATAACAAA
GACCTGCATC TTAAGCCCGG CATGACCGCC AATGTCTCGA TTGAGACCGG CCGCCGTGAC
GGTGTCCTGA AGCTGCCCGC TGCAGCACTG CGCTTCCGCC CCAAGTCAGA CGCGGATAAG
AAGGCGGCCA AAACGGGCCA AAGACCGGCA GGGAGCGGCA AAGGGAAGCC TGGTGGAGCA
CAGCAGAAGG TCTATCTGTT GAAGGATGGC CAGCCGGTAG CGGTAACGGT TACCACCGGC
CTTGGTGATT CCAGCTTTGT CGAGCTTGTT GAGGGCAGCC TGAAGGAAGG TGATCAGGTG
GTAATTGAAC AGAGTGATAA TTCAAAGAAA AAGGCCGCTG GCAGCAGTGG TTCACCCATG
GGCCCTCGTT TTTAA
|
|---|
| Protein sequence | MKKYIIIVAI LIITIAAGVW FFFGRAPKVS YKTVPLEKGS VVATISATGT VNPVTTVQVG
SQVSGTIQKL LVDYNSRVKQ GQVIAEIDPA LFLAQVEQAR GNFLNAQANL QKAKVTLADA
KRTLERNRQL ISQGIVAQSD FDASQTAYDS ALAGIKSAEA GVTQYRGTLM QAETNLKNSV
IRSPVDGIVI SRSIDVGQTV AASFQTPTLF SIARDLTKMQ IETSVDEADI SRTRLDQAVT
FTVDAYPDRS FKGRVTQVRS APITVQNVVT YIVVVQVDNK DLHLKPGMTA NVSIETGRRD
GVLKLPAAAL RFRPKSDADK KAAKTGQRPA GSGKGKPGGA QQKVYLLKDG QPVAVTVTTG
LGDSSFVELV EGSLKEGDQV VIEQSDNSKK KAAGSSGSPM GPRF
|
|---|
| |