| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_3100 |
|---|
| Symbol | |
|---|
| ID | 6366196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010814 |
|---|
| Strand | - |
|---|
| Start bp | 3319861 |
|---|
| End bp | 3320649 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642678512 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001953326 |
|---|
| Protein GI | 189426149 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGTT TTGTGCTTGT TCTGGTTGTG CTGCTTTCCC TGTCCTGTCC CGCTTTTTCT
TCCGTAGCTC CTGACGTCTC TGTCCCGATC CTGCTCTACC ACCGCTTTGG TCCCACCGTG
GCCGATGGCA TGACCATCAC CACCCCGGTC TTTGAATCCC ATATGAAGTA TCTGCATGAC
AACGGCTACA AGGTGATCCC GCTGCGCCAG CTGGTCCTGT GGTATCAAGG TAAAGCCGCG
GCCCCCAGGC CAAAATCCGT GATCATTGTC GAGGATGATG CCCATAAGAC GGTCTACAGC
GACATGCTGC CGATCATCAA GAAATACCGC TACCCGGTCA CGATCTTTGT CTACCCGTCG
GCCATCTCAA ATGCCAAGTA CGCCATGACC TGGGATCAGC TGCGCGAGCT GAAAAAGACC
GGGCTGTTTG ATATCCAGTC CCACACCTAC TGGCACCCCA ACTTCAAACG TGAAAAGCGC
AAGCTGGCTC CGGCAGCCTA TGACAAGCTG GTGCTGGAGC AGTTGCTGAA GTCGCGCAAG
AAGCTGGAAC AGGAGGTGGG TGGACCGGTG GATTTGCTGG CCTGGCCGTT CGGTATTTAT
GATGATCACC TGCTGCAAAA AGCCAAAGAA GCCGGCTTTG TCAGCACCTT CTCCATTGAG
CGCCGTCATG CCACGGCCAG GGAGAAGCTG CAGATTCTGC CCCGTTACCT GCTGGTGAAT
GCCGATAAGG AAAAGGCCTT TGCTCAGTTG ATGCAGGGGA ATGCGGTGAA GAGGAATGTG
GCGTATTAG
|
|---|
| Protein sequence | MSRFVLVLVV LLSLSCPAFS SVAPDVSVPI LLYHRFGPTV ADGMTITTPV FESHMKYLHD
NGYKVIPLRQ LVLWYQGKAA APRPKSVIIV EDDAHKTVYS DMLPIIKKYR YPVTIFVYPS
AISNAKYAMT WDQLRELKKT GLFDIQSHTY WHPNFKREKR KLAPAAYDKL VLEQLLKSRK
KLEQEVGGPV DLLAWPFGIY DDHLLQKAKE AGFVSTFSIE RRHATAREKL QILPRYLLVN
ADKEKAFAQL MQGNAVKRNV AY
|
|---|
| |