| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_1893 |
|---|
| Symbol | |
|---|
| ID | 6369050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010814 |
|---|
| Strand | + |
|---|
| Start bp | 2016670 |
|---|
| End bp | 2019309 |
|---|
| Gene Length | 2640 bp |
|---|
| Protein Length | 879 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642677299 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001952129 |
|---|
| Protein GI | 189424952 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGCCT GGTTTAACAA CCTTTCAATC ACCACTAAAG CCACCATCCT GCTTTCGCTG
ACTGCCATGT TTTTTTTGCT GGCGCTGTCG GGTGTTACCT ATTTTTTTGC CCGCCAGGAG
CTGCAGCAGT CCATTGCCAC CAACCAGACC GCCATGGTCA ACAATATTGC CGTCCAGCTG
GATGAAAATC TGGCCTCTGC CCGCAACTAT CTGCAGCATC TGGCAGGGCA TCTACAACAG
CAGCACGGAA AGGTGCCTGC ACATCTCCAG CAGATACTCG GGCATCATGA TGAAGCCCAT
CTGTTTTTCG ACCACGGTCT GATCCTGCTT TCACCGCAGG GCAGGATTGT TGCCGAGATC
CCCTACCACC CTGAGCGGAT CGGACTTGAT CGCAGCCACC GTGAATACTA CCAGCGTGTC
ATGGCAACCG GTAAGCCGTC AATCAGCGCA CCGTACCAGC TCTCGTTGCC GCCCAACCCG
CCGGTGATTG CCTTTTCCGT GCCGGTCCGG GATACCCAAA ACCGGATGAC TGGTGTGCTG
ATGGGACGGC ACAGTCTGTA TAAAAAGGGC ATTTTGCAAG GTTTGGTTGA TGCACCGATC
GGCAACAGCG GCTATTTCTA TCTTTTTAAC CAGCAGCGGA CCTTGCTGAT CCATCCTGAT
GTGTCCCGCA TCCTTACCAC TGTGGCACCT GGAAAAAACA GGGCGCTTGA TGCTGCCCTG
CAAGGCCGGG AGGGTACCTG GGAAAACACC AATTCTCTCG GCGTTGCCGG ACTGACCAGT
ATCAAACAGC TGAAGGAGGC CCCCTGGTAC CTGGCTGCTC ACTATCCACT CAGTGAGGCC
TATGCCCCCC TGCAACGTGC CCGCTTTGCC TTTGTTGCCG TACTGGTGGT TTCCATGGGG
CTGGCAGTGG TAGCGGTCTG GTTCAGTATG CAGCCGATGG TGCAGCCATT ACGCCAGTTA
ACGGAACATC TGCGGGATCT TGGACAAAAA CAGGGGGATG AACGCTTTCT GCCGGAAACG
TCACGTGATG AGATCGGACA GCTCAGCAAG GTGTTTAACG AGCTGTTGCA TGAACTGGAT
GACGACACTG CCGCCCTTGA AGAATCAGCC GAGGTCTACC GGATCGTAAC CGAGTTTACG
ACCGAGGTCT CGATCTGGCA GCTTGAAAAC GGTGATATCC GTTATATCTC CCCCAACTGC
ATTGATGTGT TCGGCTACAT GGCCGCAGAA TTTTATGCAG ACCCCGCTCT GATTTCAATC
ATGATCCATC CTGATGATCA GGCCGCCTGG CAGGGGCACC GGCCGGGAAG TTGTTCATTG
GGCGGGAGCG GAGTTGAGAC CAGGATGATT GTCAAGGATG GTTCAATCCA CCATTTCAGG
CATTACTGTC ATCAGGTGGT TGATCAGCAG GGGCGGCCTA ACGGTATCCG CAGCAGTTGG
CTGGATGTCT CCGGCCAGCA GTTGATTGAA TCCAGGGCAC GCAAACTTTC CAGGGCCGTG
GAACAGAGTG CCGGAATTGT CATTATGACC GCCACGGACG GCTCGATTGA GTATGTCAAC
CCTGCCTTCT GCAGGGCAAC CGGTTACACC GGTGATGAGG TGCTGGGAAG AAATATCGAT
CTGCTCAAGA CCGACCAACT GTCAAAAGAG GTTGAAGAGG CCCTGTGGCG CGCCATTAAC
AATGGCCAGC AGTGGCGGGG AGAGTTCTGC AACCAGCGCA AGGACGGCAG CAGGTACTGG
GTGAATGCGT CAATCTCGCC GCTGTTCGAT AAAAATAACC AGATTACGGG ATACCTGTCG
GTTCAGGAGG ATATTACCGA TAAAAAGGCG GCCGAACAGC TGATGCTGGA GCTATTCCAG
CAGGTGGAGC AGGCAAAACT TGAATGGGAG CATACGCTGG ACCATCTGCA TGACTTTATT
ATCCTGACCG ATGCCGAACA CCGGATCAGG CGCTATAACC GGATACTGGC CGACATGACC
GGCAGGGATG TCAAGGGGCT GGTTGGTAAA GACTGGCGAG ACCTGCTGCA GGAAACAGGT
TTCAAATTTG TCCACTTTAA TGCTGAAAGC GGAGAGATGC TGCACCAGCG TTCCGCCCAT
ATCTATGACA TCAATGTCTA TCCGGTCAAG GACTCGCTCG AAGGTACGTT GACCGGGTTT
GTGATCTCCC TGAACGACAC CACAGAACTG CGGGCCATTA CCCATGAGCT TGAACAGACC
ATGACGGAAC TGAACGAGGC GCAGTCCCAG ATCTATCAAC AGGAAAAGAT GGCCTCCATC
GGTCAGCTGG CTGCCGGGGT GGCCCATGAG ATCAACAATC CGATGGGCTT TATTACCAGT
AACCTTGGAT CGCTGGACAA ATATGTCAGC AGATTGTCGG ACTATATCAG CGTGGTTGAT
CAGGCCATGC AGCAGTGTAC TGTTGCCGGT CTGGTTGCCC CGGTTCTGGA GGCCCGCAAG
CAGCTCAAGA TAGACCGGAT TCTTGCTGAT GCCCATCAAC TGATTGGAGA AAGCCAGGAC
GGAGCCGGGC GGGTACGCAG GATTGTGCAG GATCTGAAGA GCTTTTCACG GGTTGATCAG
GCGGAAACCG CACTGGTTGA TCTGAACGAA ATCCTGGAAA CCACCAGGGG TTTTGCCTGA
|
|---|
| Protein sequence | MVAWFNNLSI TTKATILLSL TAMFFLLALS GVTYFFARQE LQQSIATNQT AMVNNIAVQL
DENLASARNY LQHLAGHLQQ QHGKVPAHLQ QILGHHDEAH LFFDHGLILL SPQGRIVAEI
PYHPERIGLD RSHREYYQRV MATGKPSISA PYQLSLPPNP PVIAFSVPVR DTQNRMTGVL
MGRHSLYKKG ILQGLVDAPI GNSGYFYLFN QQRTLLIHPD VSRILTTVAP GKNRALDAAL
QGREGTWENT NSLGVAGLTS IKQLKEAPWY LAAHYPLSEA YAPLQRARFA FVAVLVVSMG
LAVVAVWFSM QPMVQPLRQL TEHLRDLGQK QGDERFLPET SRDEIGQLSK VFNELLHELD
DDTAALEESA EVYRIVTEFT TEVSIWQLEN GDIRYISPNC IDVFGYMAAE FYADPALISI
MIHPDDQAAW QGHRPGSCSL GGSGVETRMI VKDGSIHHFR HYCHQVVDQQ GRPNGIRSSW
LDVSGQQLIE SRARKLSRAV EQSAGIVIMT ATDGSIEYVN PAFCRATGYT GDEVLGRNID
LLKTDQLSKE VEEALWRAIN NGQQWRGEFC NQRKDGSRYW VNASISPLFD KNNQITGYLS
VQEDITDKKA AEQLMLELFQ QVEQAKLEWE HTLDHLHDFI ILTDAEHRIR RYNRILADMT
GRDVKGLVGK DWRDLLQETG FKFVHFNAES GEMLHQRSAH IYDINVYPVK DSLEGTLTGF
VISLNDTTEL RAITHELEQT MTELNEAQSQ IYQQEKMASI GQLAAGVAHE INNPMGFITS
NLGSLDKYVS RLSDYISVVD QAMQQCTVAG LVAPVLEARK QLKIDRILAD AHQLIGESQD
GAGRVRRIVQ DLKSFSRVDQ AETALVDLNE ILETTRGFA
|
|---|
| |