| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_1339 |
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| Symbol | rpoB |
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| ID | 6368022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter lovleyi SZ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010814 |
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| Strand | + |
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| Start bp | 1381713 |
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| End bp | 1386206 |
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| Gene Length | 4494 bp |
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| Protein Length | 1497 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642676741 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001951580 |
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| Protein GI | 189424403 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTACT CGATCGCCAA CAACCACCTG CTGCGCAAAA ACTTTGCCAC TATCAAGAAT
ATCATTGATA TCCCTAACCT GATTGACATT CAGAAAAACT CCTACCGTCG TTTTTTGCAG
TCTGACGTCC CGTTGGACTT GCGTAAAAAC ATCGGTCTTG AAGCTGTTTT TCGGTCTGTT
TTTCCTATAA AGGACTTCAG CGAAACATCA TCGTTGGAGT ATGTCTCCTA TACGCTGAGT
AAGCCCAAGT ATGATGTTGA GGAATGCCAT CAACGGGGTA TGACCTATGC AGCCCCTATG
AAGGTTAAGG TCCGGCTTGT CATTTGGGAT TCGGGTAAGG AGTCGGGTGT CCGTGGTGTT
AAGGATATTA AGGAGCAGGA GGTCTACTTC GGGGAAATAC CGTTGATGAC CGAAAACGGC
ACCTTTATTA TCAACGGCAC TGAGCGGGTT ATCGTTAGCC AGTTGCATCG TTCACCGGGT
GTATTCTTTG ACCATGATAA AGGTAAGACT CACTCTAGTG GTAAGGTCCT TTATTCTGCG
AGGGTAATTC CCTACCGCGG GTCTTGGCTC GACTTCGAGT TTGACCACAA GGATATTCTG
TTTGTACGGA TTGACCGTCG TCGCAAGATG CCGGCAACTG TCCTGCTAAA GGCTCTAGGA
TATTCAGTTG AACACCTCCT GAACTATTAC TACAAGAGTG AGCAGATCTA TATTGCTGCG
GGTGAGCTGC GTAAGGGCAT TGAACCCGAG TTGCTTACCA TGCAGAAGGC AGTAGTCGAT
GTTGCAGACG CTAATGGTGA GGTAATTGTA AAGGCCAACC GCAAATTCAC CAAGGCCTCT
ATAAAGAAAC TCTTGGATCA CGGAGTTACG AGCATTCCCA CCAGCTCCGA GAGCATTATT
GGCCGCTATG CTTCTGCTGA TGTTGTCGAT CCGGTAACCG GTGAAATACT GCTGGAATGC
AATCAGGAAC TGACAGCTGA TAAGCTTGAC GAGTTGCGTC AAAAAGAGGT TACAACCTTC
AACCTGCTGT ACATTGACGG TTTGAACGTC ACCTCTTCCT TCCGTGATAC GCTGCTTGCT
GATAAAATCA GCTCCAGTGA TGAAGCCTTG ATCGAGATTT ATCGGCGTTT GCGTCCGGGG
GATCCACCAA CTCTCAAGAG CTCACTGGCA CTCTTTGATA ACCTGTTCTT TAACCCTGAA
CGTTATGATC TTTCAGCTGT TGGTCGTCTG AAGCTGAACT TTAAACTGGG ACTGAAGGTG
TGGCCGGATT GTACGATTCT TAACGGACCC ACTATGTTGA CAGCTGCTGA GCTGCAAAAT
GCAGAGCAGT TGATTGGTAG CTTGCTGAAT GGTACCCGTC CAGTTGACCT GGCTTTAAAA
GACAGACTTT CAAGCGATCT GACTAAATCG CTTAAAAAGC TCGATTTGAA ACAACCGGTA
CCTGAGCGTC TGCTGGAACA GCTGGCTGAT GAACTGAATA GTGCGGTAGC CAACGCTGAG
TTCTTCCAGC GTGATCTGAT TGCAGGTCTT GAACTGCCTG AGTCGTTCAT AAAACTGATG
GATCTGATTG AGCAGGGTGG CTATGACGAA AATCGTCGGC GCATTGAAGG CCTGCGCCGC
AATCGTATGC TTTTGGAAGT TGCCTATGGC GACTCTGTGG AGTGCTGCAA CCGCAACGAC
ATTCTTGAGA TCGTTCGTTA TCTGATTGAG TTGAAAAATG GTCGTGGTGC GATTGACGAT
ATTGACCACT TGGGCAATCG TCGTGTCCGG GCAGTTGGTG AATTGCTTGA GAATCAGTAT
CGGATCGGTC TGGTACGGAT GGAGCGGGCA ATTAAGGAAC GGATGTCGTT GCAGGAAGTT
GAAAACCTGA TGCCGCACGA CTTGATTAAC TCAAAGCCTG TGTCTGCGGT TGTCAAGGAA
TTCTTTGGTT CATCGCAGCT GTCACAGTTT ATGGACCAGA CCAACCCTCT GTCTGAGGTC
ACTCATAAGC GTCGTCTGTC GGCTCTTGGA CCAGGTGGTC TGACCCGTGA ACGTGCCGGC
TTTGAGGTGC GGGACGTGCA TCCCACCCAC TATGGCAGGG TCTGCCCGAT TGAAACGCCG
GAAGGTCCGA ACATCGGCTT GATCGCTTCT CTCTCCACCT ACGCCCGGAT CAACGAGCAT
GGTTTTGTTG AAACACCGTA CCGCTTGGTA CGGGAGGGAC AGGTTACCAG TGAGGTGAAG
TTCTTCTCTG CACTGGAAGA GGAAGGACAT GCCATCGCCC AGGCAAATGC TCTGGTGGAT
CAGGACGGGC GGTTTATTAA TGAGTACGTC TCTGCACGGA AGAGCGGCGA GTTTGTACTG
GTGCAACGTG ACGAAATTGA GCTGATGGAC GTAGCACCCA AGCAGCTGGT ATCCGTTGCT
GCGGCACTGA TTCCGTTCCT GGAAAACGAT GACGCAAACC GGGCCCTGAT GGGATCCAAC
ATGCAGCGTC AGGCAGTTCC ACTGTTACGC GCGGATTCCC CGTTGGTGGG TACCGGCATG
GAACGTATTG TGGCGAAGGA TTCCGGCGTC TCGGTTATTG CCCGCCATAA TGGTGTTGTT
GATGCGGTTG ATGCAGGCCG GATCGTGATC AAAATTGATG AAGAAGAGTA TGATGAGACC
GGTACCGGCG TTGATATTTA CAATCTGGTG AAGTTCTCCC GCTCCAACCA GAATACCTGT
ATCAACCAAA AGCCGGTGGT AAAAGTCGGG GACAAGGTCA AACGCGGCGA TGTCATTGCT
GATGGCCCCT CAACCGATAT GGGCGAACTG GCCCTTGGTC AAAACATCAT TGTGGCCTTC
ATGCCTTGGG GCGGTTATAA CTTTGAGGAC TCCATCCTGG TTTCTGAACG GCTGACCAAG
GATGACCGCT ACACATCAAT TCACATTGAA GAATTTGAGT GTGTGGCCCG TGATACAAAG
CTAGGTAAGG AAGAAATTAC CGCTGATATC CCGAACCTTG GCGAAGAGGC TCTTAAAGAC
CTGGATGAGT CAGGTATCAT CAGAATCGGT GCCGAGGTCA AACCCGGCGA TATTCTGGTC
GGTAAAATCA CTCCCAAAGG TGAGACCCAG CTCTCTCCCG AAGAGAAACT GCTGCGTGCG
ATCTTCGGTG AAAAGGCCGG AGATGTCCGT GATACCTCCT TGACCATACC TCCGGGCGTG
GAAGGTACCG TTATCGGCGC CAAGGTGTTC TCCCGTAAAG GTAATGATAA GGACGCCCGG
ACTGAACTGA TTGAGAAGAT TGAGGAAGAA AAGCTTCGTA AGGATGAGCA GGATGAGGTC
CGTATTATCC GTGATTCAGC TCGCGGCAAG CTGAAGCGCC TCCTGGTGGG TAAGACTGCC
GGCGCCAAGA TTGAGGATCG TCACGGCGTA ACCGTTCTTG CCAAGGGCAA AAAGATTACC
GATGAACTGC TTGAGTCCCT GACCATGGAC CGTTGGGCAA CCATTTCAGT CAGTGACGGA
ACCGATGTCG AGGAAAAAGT CGCTGAGGTC CTGTCCAAAC TCAACGAGCA GGTCGAGCTT
ATTCGCGGGG TATTCGACGA TAAGGTTCAA AAGCTGAGAA GGGGCGACGA TCTGCCTCCC
GGCGTAATCA AGATGGTCAA GGTCTATGTT GCCATCAAGC GTAAGCTTCA GGTCGGTGAC
AAAATGGCTG GTCGCCACGG TAACAAGGGT GTCGTTTCAC GAATCCTGCC GGAAGAAGAT
ATGCCGTATA TGGACGATGG ACGTCCCGTT GAAATTGTGC TGAACCCTTT GGGTGTTCCT
TCCCGTATGA ACGTTGGACA GATCCTGGAG ACCCACCTCG GCTGGGCTGC TAAAGGTCTG
GGGTGGAAGA TTCAGAAGAT GCTGGAAGAG CATACCTCTG AAGAAAACCT GAAGAAGTTC
ATTCGTGAAA CATACGATAA TGCTGACTTC AATAAGATCC TTGATACCAT GGACCGTGAA
GAGCTGTTGC TGGTTGCGCG GCGCCTGTCA CGTGGCGTGC CGATGGCATC ACCGGTTTTC
GAAGGTGCCG GTGAGGCGAA AATCAAAGAG CTGTTGACCC GCGCCGGCTT TGCCACCAAT
GGCCAGGTAA CGCTTTTTGA CGGCCGTACT GGTGAGCCGT TTAAGCATAA GGTAACGGTT
GGTATCATGT ACGTCCTGAA ACTGCATCAC TTGGTCGATG ACAAGATCCA TGCCCGTTCA
ATCGGACCTT ACTCGCTGGT TACGCAGCAA CCACTGGGTG GTAAGGCTCA GTTTGGTGGC
CAGCGTCTGG GTGAAATGGA AGTCTGGGCG ATGGAGGCAT ATGGCTGTTC TTATGCACTG
CAGGAGTTCC TGACCGTCAA GTCGGACGAC GTCTCCGGAC GTACCCGCAT GTACGAAGCG
ATTGTGAAAG GTAAGCACAC GTTGGAGCCT GGCCTGCCAG AGTCATTTAA CGTGCTTATC
AAGGAACTTC AATCACTTTG CCTTGATGTG GAGCTGCTTG AAGGGGATGA GTAA
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| Protein sequence | MAYSIANNHL LRKNFATIKN IIDIPNLIDI QKNSYRRFLQ SDVPLDLRKN IGLEAVFRSV
FPIKDFSETS SLEYVSYTLS KPKYDVEECH QRGMTYAAPM KVKVRLVIWD SGKESGVRGV
KDIKEQEVYF GEIPLMTENG TFIINGTERV IVSQLHRSPG VFFDHDKGKT HSSGKVLYSA
RVIPYRGSWL DFEFDHKDIL FVRIDRRRKM PATVLLKALG YSVEHLLNYY YKSEQIYIAA
GELRKGIEPE LLTMQKAVVD VADANGEVIV KANRKFTKAS IKKLLDHGVT SIPTSSESII
GRYASADVVD PVTGEILLEC NQELTADKLD ELRQKEVTTF NLLYIDGLNV TSSFRDTLLA
DKISSSDEAL IEIYRRLRPG DPPTLKSSLA LFDNLFFNPE RYDLSAVGRL KLNFKLGLKV
WPDCTILNGP TMLTAAELQN AEQLIGSLLN GTRPVDLALK DRLSSDLTKS LKKLDLKQPV
PERLLEQLAD ELNSAVANAE FFQRDLIAGL ELPESFIKLM DLIEQGGYDE NRRRIEGLRR
NRMLLEVAYG DSVECCNRND ILEIVRYLIE LKNGRGAIDD IDHLGNRRVR AVGELLENQY
RIGLVRMERA IKERMSLQEV ENLMPHDLIN SKPVSAVVKE FFGSSQLSQF MDQTNPLSEV
THKRRLSALG PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLIAS LSTYARINEH
GFVETPYRLV REGQVTSEVK FFSALEEEGH AIAQANALVD QDGRFINEYV SARKSGEFVL
VQRDEIELMD VAPKQLVSVA AALIPFLEND DANRALMGSN MQRQAVPLLR ADSPLVGTGM
ERIVAKDSGV SVIARHNGVV DAVDAGRIVI KIDEEEYDET GTGVDIYNLV KFSRSNQNTC
INQKPVVKVG DKVKRGDVIA DGPSTDMGEL ALGQNIIVAF MPWGGYNFED SILVSERLTK
DDRYTSIHIE EFECVARDTK LGKEEITADI PNLGEEALKD LDESGIIRIG AEVKPGDILV
GKITPKGETQ LSPEEKLLRA IFGEKAGDVR DTSLTIPPGV EGTVIGAKVF SRKGNDKDAR
TELIEKIEEE KLRKDEQDEV RIIRDSARGK LKRLLVGKTA GAKIEDRHGV TVLAKGKKIT
DELLESLTMD RWATISVSDG TDVEEKVAEV LSKLNEQVEL IRGVFDDKVQ KLRRGDDLPP
GVIKMVKVYV AIKRKLQVGD KMAGRHGNKG VVSRILPEED MPYMDDGRPV EIVLNPLGVP
SRMNVGQILE THLGWAAKGL GWKIQKMLEE HTSEENLKKF IRETYDNADF NKILDTMDRE
ELLLVARRLS RGVPMASPVF EGAGEAKIKE LLTRAGFATN GQVTLFDGRT GEPFKHKVTV
GIMYVLKLHH LVDDKIHARS IGPYSLVTQQ PLGGKAQFGG QRLGEMEVWA MEAYGCSYAL
QEFLTVKSDD VSGRTRMYEA IVKGKHTLEP GLPESFNVLI KELQSLCLDV ELLEGDE
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