| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_1156 |
|---|
| Symbol | |
|---|
| ID | 6367741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010814 |
|---|
| Strand | + |
|---|
| Start bp | 1208947 |
|---|
| End bp | 1211526 |
|---|
| Gene Length | 2580 bp |
|---|
| Protein Length | 859 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642676553 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001951398 |
|---|
| Protein GI | 189424221 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0136706 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCTAT TTAAAAAGTT TGTTTCGTTT ACCGCTGCTA CCCTCAAACG TTTTATCTTT
ACGGCAACCC TGATTGTTTC TGCGGTTACC TTTGCCGTTG TCATCACAAT TGTTTCCTTC
CTTTTTCTGA AGCAGGCCCA TGACACCAAA ACCCACGAGT CCGGCCTTAT CGCCCGGCAT
ATCCTTGCGG CGATCACTGA AGTCATGGAG CAAGGGGGCA CGATTGCCGA GATCGAGCAC
ACCCTTGATG ACTATCGCCG GCTTTTCCCC AGGCAGACCA TTACCATCCA GACCCCCCGG
AACGGTACCG TTGGCTGGCA GAGCGATGAA CCGGCTGTCG CCGATGTGCT GCGAACCGGG
AATGCGGTGC ATCGTCACAC CCCGTACACT TCGATCAATG TCTTTCCTGT CAAGGCTGAA
ACCAGCTGCC GTAGCTGTCA CCCGGCATTT CAGGCCGGTC AGGTCCAGGC AATCCTCGCC
ATTAAAGAGG ATATCAGTCA GGCCAGCTTT ACCCTGCTTA ACCGGGCGCT CTCCAGTTTT
CTGCTGCTGC TGCCGTTTCC GCTGCTGATG GCTTTTCTGG TCGCACGTTT CGTCAATCAC
CATCTTGGTG ATGCCGTATC GAAGTTGAAC AGCAAGGTGC ATTCCGTTAC CACCGTCTCA
GATCTGACCC TGCTGGGGCA GGAGCTTGAG TCGGAAGGTG AGACACTGAA ATTTGGCGAG
CTTGAGGCGA TTTTCGGCGA ATTCAGCGGG TTAGTGACCA GGATTCGTGA CGTTGCCGTG
GGCAGGGAGA TGCTGGAATT TGAGATCAAG GTGCTGGAGC GTTTTATCAT TACCTCCGAG
GCGATCCGGG ACTGGAAGGA GCGGGTCGGC TACCTGCTGA ACGAGGTCAA CAAGGTCATG
CCGGCCTATG CCCTGTTCTG CGTTTTTCAG GTGGAGGAAG ATGGATATGA TATAGAAATT
TTCTGGTCTG CGCCGCCGAC AGCGGCAACC CGCAGCACCA TGGAGCTGAT TGTCAGGCAG
CAGATCAAGG ATGAGAAGCT GCGTTGCAGT TCTGAGGCGG CAATCATGAT CATCCACAAT
ATTACGAATG AATCTGCTCC CCTGTTGGAA CTGGCCCGTG ATGAGATTGA GCTGGAGACC
AAGTCGCTCT ATCTGGATAT GCCCCAGATC GGCGGCGTGG TGGGGATCGG GGTGCAGTCC
CAGATTATGG CCGACCCGAT CCGTTCGCTG GTGATCAACA GTATCCTGAC CACCCTGCTG
AATGTGATCG GCTCGATCAA GGCGATCTAT AAATACACCA AGGATCTTGA ATACTACGCG
ACCCGTGACC CACTGACCAA CCTGTTCAAT CAACGGGTCT TCTGGGAGCT GCTGGGGTAC
GAGATCGGTC GTGCCGAGCG GCATCACCAG CAGTTTGGGG TGCTGGTGAT TGACCTGGAT
AACTTCAAGC ATATCAACGA TACCTACGGC CATCTGGTGG GTGACAAATA TCTGGTGCAG
ATTGCCGACA CCATTCATGC AAGTCTGCGT TTAGGGGATA TCCTGGCCCG TTACGGCGGC
GATGAGTTTG CCATTGTGCT GCCCGATGCT GATCATGAGC AGGTGCATAT GGTTGCCAAC
CGGATCAGGG AGGCCATGGA GGCGATGACC CTGGTGACGG CCGACGGCAG CAAGATCCGC
GGTACCGCCT CCATCGGCTA TGCGGTCTGC CCTGATCACG CCACGACTGC CAAAGATCTG
TTTCTGTTTG CCGATAACAT GACCTACAAG GCAAAATCGC TGGGTAAAAA CTGTATCGTC
GTGCCGACCA ATGATGATGT GGTGGAGGTC TTCCAGAAAA GCAGCGACAT GTCGCGGCTG
TTGCTTAATG CGCTGGAAGA GAAGCAGGTC GTTCCGTATT TTCAGCCGAT TGTTACCAGC
GATGGACAGG TGGTGGTCTG TAATGAAGTG CTCTGCCGGG TGCTGGTCGG TGATCAGGTC
ATTCCAGCCT CAGAGTTCAT CGAGATTGCT GAAAAGCTGG GGGTGGTCAG CCGCCTTGAT
GCCATTCTGA TGGAAAAGGT CTTTGCCCAG GCCCAGGCTG ATGCGTACGA TGGGTATCTG
TTTATTAATC TCTCTCCCAA GTCGTTGATC CTCAAAGAGT TTGTTCCTTC CGTGATCAAG
CTGTCCAACC AGTATCAGAT TGCCCATGAC AAGGTGGTTT TTGAGATTAC CGAACGGGAA
ACCGTGAAAA ACATGACGTT GCTGGAACAG TTTGTCCAGG ATCTGAAGTT GGAGGGATTC
AAGTTTGCGA TTGATGACTT CGGTTCAGGT TTTTCTTCAT TCCAGTATAT CCGCAGGCTG
CCGATTGACT TTGTCAAGAT TGAGGGGATG TTTGTGCTCA ACATGCTGAA CGATCCCAAA
GACAAGGCCT TTGTCAAGAC CCTGGCGGTG CTGGCCCGGG AGTTCGGCAT CAAGACCATT
GCCGAATATA TCGAAAGTGA AGAGTTGTTG CAGGCGGTGC GGGAACTGGG GATAGATCTG
GCTCAGGGCT ACTACACCGG CAGGCCTGAG GCAACCATCA GAAAGACAAC AAAAGGGTAG
|
|---|
| Protein sequence | MFLFKKFVSF TAATLKRFIF TATLIVSAVT FAVVITIVSF LFLKQAHDTK THESGLIARH
ILAAITEVME QGGTIAEIEH TLDDYRRLFP RQTITIQTPR NGTVGWQSDE PAVADVLRTG
NAVHRHTPYT SINVFPVKAE TSCRSCHPAF QAGQVQAILA IKEDISQASF TLLNRALSSF
LLLLPFPLLM AFLVARFVNH HLGDAVSKLN SKVHSVTTVS DLTLLGQELE SEGETLKFGE
LEAIFGEFSG LVTRIRDVAV GREMLEFEIK VLERFIITSE AIRDWKERVG YLLNEVNKVM
PAYALFCVFQ VEEDGYDIEI FWSAPPTAAT RSTMELIVRQ QIKDEKLRCS SEAAIMIIHN
ITNESAPLLE LARDEIELET KSLYLDMPQI GGVVGIGVQS QIMADPIRSL VINSILTTLL
NVIGSIKAIY KYTKDLEYYA TRDPLTNLFN QRVFWELLGY EIGRAERHHQ QFGVLVIDLD
NFKHINDTYG HLVGDKYLVQ IADTIHASLR LGDILARYGG DEFAIVLPDA DHEQVHMVAN
RIREAMEAMT LVTADGSKIR GTASIGYAVC PDHATTAKDL FLFADNMTYK AKSLGKNCIV
VPTNDDVVEV FQKSSDMSRL LLNALEEKQV VPYFQPIVTS DGQVVVCNEV LCRVLVGDQV
IPASEFIEIA EKLGVVSRLD AILMEKVFAQ AQADAYDGYL FINLSPKSLI LKEFVPSVIK
LSNQYQIAHD KVVFEITERE TVKNMTLLEQ FVQDLKLEGF KFAIDDFGSG FSSFQYIRRL
PIDFVKIEGM FVLNMLNDPK DKAFVKTLAV LAREFGIKTI AEYIESEELL QAVRELGIDL
AQGYYTGRPE ATIRKTTKG
|
|---|
| |