Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Glov_1062 |
Symbol | |
ID | 6368597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter lovleyi SZ |
Kingdom | Bacteria |
Replicon accession | NC_010814 |
Strand | + |
Start bp | 1101909 |
End bp | 1104992 |
Gene Length | 3084 bp |
Protein Length | 1027 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642676457 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001951305 |
Protein GI | 189424128 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.782086 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACATCG GCAAAATCAA TAAATTTCGC CTGCAATGGG GGATACTGCT GTTTGGCTTG TTGTTGCTGG CCGGTGCTGT TATCCACAAT CTCTACCGGA ACTATGAGGA TATCCTGGAG GCTGAGCAGC AGCGTCTGTT GACCCAGTCC CGCGTGATTG CCGTCAATGT AGCCAACCGC CTGGAGAGTA CCGACAGGAT TCTGCGTCTG ATCCGGCGAG AGCTGGGCGC CTACTCTGAG AAGGAGTGGT CCAGCCAGAT ACCGCACCAG CGCTTTGAAC TGATGGTGGA TGCGCTTTCC GGGGTGCACA GCATGCTGGT GCTGGATGCC CGGGGAAAGG TTGTGATCAG CAATCACCGG GAGGCACTGG GAAGCAATCT GGGGGGGCGC CCCTATTTTC AGGCTGCCCT GCGTGACCCA AATCCGGAAA AACTTTATGT AACGCCGCCG TTCAAGACCC TGCCGGGAAC CTGGGGCATT GCACTTGTGC GGGTTATCCT GAACAGCCAG GGGCAGTTTA GTGGTGTGGT GGTGGCAACC CTTAACCCTG AATACTTCAA AGTGCTGCTG GGCTCGGTGC AGTATGCGCC GGATATGCGG TCGTGCCTTG CCCATGGGGA TGGACTGCAA TTCATCATGG AGCCGGACCG TCTCGGGCAA CAGGGTATGA ATCTGGCCAA ACCCGGTTCA TTTTTTACCC GTCACATGCA GAGCGGCAAA AAGGAAAATG TGCTGAGCGG CACGGTCTAC TCCACCGGCG AACAGCGCTT GATGGCATTA AGCACGGTGC AGCTTGCAGT ACTCGGCATG GACAGACCGC TGGTCATAGC GGTGAGTCGT GACCTGAAGC AACTCCATGC CGGTTGGCAC AAACATGCGG TTAACCAGGC CATCACCTTC AGTATCATCG TTGCTCTAAG TATCTCTGCC CTGATCGGTT TTCAGGGATA TCAGCGTGAA CAGTTGGCAA AGGCCCGTGC CGTTGAACAG GCATTGCTTG ATGCTCGTCA GCAACTTAAT GATATTATAG ACTTTTTCCC TGATGCGGTC TTTGTGATTG ATCGGAACAA GCGGGTGACG ATCTGGAACC GGGCCATTGA GAAGATGTCC GGGGTACCAA AGGAGGAGAT GCTTGGCAAG GGGGATCACG AATACAGCAT CCCGTTTTAC GGACAGCGCC GAACCCAGCT GCTTGACCTG CTGGATCTGG ATGATGCCGA GCTGGCGGCG AAATACAGTA ATATCCGGCG TGTCGGAGAA GTACTGGATG CCGAGACCTT TTGCCCGGCC CTGCATGACG GCAAAGGGGC CTATGTCTGG GCCACCGGTG TACCGCTCTA TAATGCCGCC GGGGAACGGA TCGGAGCCAT TGAGGCGATC CGGGACATCT CGGACCGCAA ACAGTCCGAA CTCTTCCTCA AGAAATTGAC CCACGGAATT GAGAATAGCG CCAGCGCTGT TGTGATAACG GATACGCAGG GCGTCATTGA GTATGTGAAC AAGAAATTTA TCCAGCTGAC CGGGTTCAGC CTGGAAGAGG CGGTCGGGAA GAATCCCCGC ATCCTGAAGT CGGAAGCGAC GCCACCAGAG GTGTTTGTAG ACCTCTGGAA GACCATTTTG AGCGGTCGGG AGTGGCGGGG CGAGCTGCTG AACCGCCGAA AAAACGGCGA GGTTTACTGG TCAATTACCT CGATCAGCCC ATTGCGTAAT GATAGCGGCG AGATTACCCA TTTTATTGCC AACGTTGAAG ACATTAACGA GCGGAAAAAC GCCGAGGCCA CCATCGAACA CCTGGCCTAT TTCGATCCCC TGACCGACCT GCCTAACCGC CGCATGCTGC AGGATCGTCT GGAGCTTGCC CTGCGCCGCA GCCGGCGTCA TGGCAGTAAT GTTGCGCTTA TGTATCTGGA TCTGGATAGT TTCAAACATG TCAACGACAG TATGGGGCAT CCGGCGGGTG ACCTGCTGCT GAAGGAAATG GCGGGGCGTT TCAGCGGGGT GGTGCGCGAC GATGACGTGG TCTGCCGGCT GGGGGGAGAC GAGTTCGCCC TGATCCTGCA TGATATCCAT CAGGATCAGG ATGTGGTGCC GATTGCCCAG AAGCTGATCG AGGCCGTAGC GCAGCCGGTG CCGCTGGATG GCCGCGAAGT GGTGGTGACG GCCAGTATCG GCATTGCCCT GTTTCCCCGC GACGGCGGGG ATGTCAAGAA TCTGGAAAAA CATGCCGACA TCGCTCTGTA CCATGCCAAG GAAGAGGGTA AAAATACCTT CCGTTTCTAC CTGGAGGAAC TGAACAGTAC CATCAGTACC CGGATTGCAC TGGAACAGGG CTTGCGCTAT GCCAAGGAAC GGCAGGAGCT GGAACTGCAC TACCAGCCCA AGGTCTGTGT GGCGAGTGGC AAGGTGAGCG GGGTGGAGGC GCTGTTGCGG TGGCATAGCC CGGATTTCGG CCTGGTGTCG CCTATCCGCT TTATACCGTT GGCTGAACAG ACCCGGCTGA TTATTCCGAT CGGCGAATGG GTGCTGCGCA CCGCCTGTCT GCAGCAGGTG CAGTGGCGTG AACAGGGGTT GTTGCTCAAC ATGGCGGTCA ACCTGTCTGC TATTCAGCTC AAATCCCCCG GTCTGGTTGA GCGGGTCGCG GCCATTATCG ATGAAACCGG TATACAGCCG GAACATCTGG AACTTGAGCT GACCGAGAGC GCCCTGGTCA ACAATCCCGA TGAGGTCGTG CAACTGCTGG AGCGGTTGCG TACCCTGGGG TGCAGCATCT CCATCGACGA CTTCGGCACC GGCTATTCCT CGCTCAGCTA CCTCAAGTCC TTCCCGGTAA CCATCCTCAA GATTGATCGT TCCTTTGTGC GCGATCTGGC CCATAACTCG GGCGATCGGG CCATTGCCCG GTCGGTGGTA GATCTGGCGA ATAACCTTGA CATGAAGACC GTGGCGGAAG GGGTTGAATC AGAGGAACAG CTGACGATCC TGCAGCAGAT CGGCTGTACC TATATTCAAG GCTTTATCTA CTCCCGGCCG GTACAGGCTG ATCAGGTTTC AGCAGTGGTG CGGAGATTAG GCGGGGCAGC GTAG
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Protein sequence | MYIGKINKFR LQWGILLFGL LLLAGAVIHN LYRNYEDILE AEQQRLLTQS RVIAVNVANR LESTDRILRL IRRELGAYSE KEWSSQIPHQ RFELMVDALS GVHSMLVLDA RGKVVISNHR EALGSNLGGR PYFQAALRDP NPEKLYVTPP FKTLPGTWGI ALVRVILNSQ GQFSGVVVAT LNPEYFKVLL GSVQYAPDMR SCLAHGDGLQ FIMEPDRLGQ QGMNLAKPGS FFTRHMQSGK KENVLSGTVY STGEQRLMAL STVQLAVLGM DRPLVIAVSR DLKQLHAGWH KHAVNQAITF SIIVALSISA LIGFQGYQRE QLAKARAVEQ ALLDARQQLN DIIDFFPDAV FVIDRNKRVT IWNRAIEKMS GVPKEEMLGK GDHEYSIPFY GQRRTQLLDL LDLDDAELAA KYSNIRRVGE VLDAETFCPA LHDGKGAYVW ATGVPLYNAA GERIGAIEAI RDISDRKQSE LFLKKLTHGI ENSASAVVIT DTQGVIEYVN KKFIQLTGFS LEEAVGKNPR ILKSEATPPE VFVDLWKTIL SGREWRGELL NRRKNGEVYW SITSISPLRN DSGEITHFIA NVEDINERKN AEATIEHLAY FDPLTDLPNR RMLQDRLELA LRRSRRHGSN VALMYLDLDS FKHVNDSMGH PAGDLLLKEM AGRFSGVVRD DDVVCRLGGD EFALILHDIH QDQDVVPIAQ KLIEAVAQPV PLDGREVVVT ASIGIALFPR DGGDVKNLEK HADIALYHAK EEGKNTFRFY LEELNSTIST RIALEQGLRY AKERQELELH YQPKVCVASG KVSGVEALLR WHSPDFGLVS PIRFIPLAEQ TRLIIPIGEW VLRTACLQQV QWREQGLLLN MAVNLSAIQL KSPGLVERVA AIIDETGIQP EHLELELTES ALVNNPDEVV QLLERLRTLG CSISIDDFGT GYSSLSYLKS FPVTILKIDR SFVRDLAHNS GDRAIARSVV DLANNLDMKT VAEGVESEEQ LTILQQIGCT YIQGFIYSRP VQADQVSAVV RRLGGAA
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