| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_0872 |
|---|
| Symbol | ispD |
|---|
| ID | 6366149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010814 |
|---|
| Strand | - |
|---|
| Start bp | 897261 |
|---|
| End bp | 897977 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642676268 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_001951116 |
|---|
| Protein GI | 189423939 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAA CGCGTGCCTT TGCCTTGATT CCCGCCGCCG GAATGGGAAA ACGGATGGGA
GCCTCCATGA ACAAGCAGTA CCTGCAACTG GGAGGCATAC CGATTGTTGC CCGCACCCTG
CAGGTATTCC AGGACAGCCC GCTCATCAGC GGCATCATAC TGGTTATCCC AGAAGATGAG
ATCCCTTACT GCCGGCGTGA AGTTGTCGAA AAATACCGGT TTTCAAAGGT GCTGGATGTT
GTTTCCGGCG GTTCCGAGCG CCAGCATTCG GTACTGAACG GACTGCAGGC ACTGCAGGAC
CATACCGCGC CTGACGATAT CATCCTGATC CATGACGGTG TCCGCCCGTT TATTGACGAA
CTGATCCTGC AGCAGTCCAT TGACCTGGCC ACCACCGGGG TCGGTGCCCT GGTTGCCGTT
CAGACCAAAG ACACCATCAA GGTGGTACAC GATGGTACCG TCGTCTCAAC ACCGGATCGT
TCTACCCTCT GGCAGGCCCA GACCCCCCAA AGCTTCAAGT TTGGGCAGAT ACTGGCAGCC
CACCACCAGG CGCTGCAGGA AGGCTTCCTG GGAACCGACG ACTGTTCCCT GCTGGAGCGC
TTCAACGGGA CCGTTAGAAT CGTGAACGGC AGCTATCGAA ACATAAAGAT CACCACTCCG
GAAGACCTGG TGCTTGCCGA GGCGTTTCTA AACCAGACAG CTGGAGGCCG GCCATAA
|
|---|
| Protein sequence | MNKTRAFALI PAAGMGKRMG ASMNKQYLQL GGIPIVARTL QVFQDSPLIS GIILVIPEDE
IPYCRREVVE KYRFSKVLDV VSGGSERQHS VLNGLQALQD HTAPDDIILI HDGVRPFIDE
LILQQSIDLA TTGVGALVAV QTKDTIKVVH DGTVVSTPDR STLWQAQTPQ SFKFGQILAA
HHQALQEGFL GTDDCSLLER FNGTVRIVNG SYRNIKITTP EDLVLAEAFL NQTAGGRP
|
|---|
| |