Gene Clim_2521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_2521 
Symbol 
ID6355140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand- 
Start bp2760166 
End bp2761917 
Gene Length1752 bp 
Protein Length583 aa 
Translation table11 
GC content47% 
IMG OID642670109 
Product60 kDa inner membrane insertion protein 
Protein accessionYP_001944518 
Protein GI189347989 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.39836 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAGAA ATTCAGTAAC CGGTCTGGCG CTGATAGCTT TGATCATGAT TGTCTGGCTC 
CAGTTTATGT CGCCGGACAA AAAGAGCGTA CAGCCGGATA ACAGGCCGAA AGCCCAAACA 
ACGGCAACGG TTTCACAGGA AAAAACTGAA GCGCCCGCTG CTCTCAGATC GGATACTTTC 
GGTGTTTTTG CTGAAGCGTC AACTGGCGCG GAAGAGTTGG TTACGGTTGA TAATGAACTG 
TTTACCATGA CGCTTTCGTC CAAAGGCGCC ACCATCAAGT CTGTCGTGCT TAAGAACCAT 
CTTGATGGCC AGCTTAAGCC TTTCGATCTG GTAAGCAGTC ACGACAAGGG AGCGCTTTCA 
TTGTTGTTTC TCAATGTTGA GGGTAAAAAA ATCGATACGC GCGAGCTGTA TTTCAGGCTC 
GTTTCACAGG AAAAAAAACA GACCCTGAGC GGAAAAAAGA TAGCTGTTGT ACGTTATCGT 
CTCGATATAA ACCCGCAGCA GGCAATAGAT ATTGTCTACA GGTTTTCCGG GAACAGTTAC 
AAGGTTGATT ATGATGTAAA GCTGACCGGA TTTGATAATG CGCTTGCGGG GAATGAGTAC 
CAGTTGCAGT GGGATGGAGG GCTGGCTTAT TCCGAAAAGA ATCGGGAGGA TGAATCCCAT 
AATGCATTGG CAGGGGCTTT TCTTGGCGGA AGCCTTGTCA AGATCGACGC TTCCAAGGAG 
AACCAGACCT ATCGTGAGGA GCAGTCAGGC GAGGCCGGAT GGGTTGCTGT CCGTAACAAG 
TACTTTGTTG CCGCACTTAT TCCTGGCAGT AAAACAGAAG GGATCTATCT TGAGGGAAAG 
AAAGGATCCG GACATTTTGA GGAGTATCTC GCTTCTTTGA AGATGTCGGT TCCCTCGACG 
GAGAAGGTTG CTTCAAATCA TTTCTCGCTC TACATTGGCC CGCTTGATTA CAATACGGTA 
AAAACCCTCG ATGCCAATCT GGAAAAAATC ATGGATTTCG GCTGGGATTG GCTGACCAGA 
CCGTTTGCCG AGTATGTTAT TTTACCGGTG TTTACCTGGA TGAATGGTTT TATCAGTAAT 
TATGGTCTGA TTATCATTAT TTTTGCACTC CTGATCAAGC TGGTTACCTA TCCGCTTTCG 
ATGGCATCGA CCAAGTCGAT GAAAAAAATG GCGGCTCTCC AGCCGATGCT CAAGGAGCTT 
CAGGAGAAAT ACAAGGACAA TCCGGCAAAG CTGCAAAGCG AGCTGGGACG GATATATAAG 
GAGGCTGGAG TCAACCCGCT TGGAGGCTGC CTGCCAGTGG TACTCCAGAT GCCGTTGCTT 
TTTGCGATGT TCTATGTATT CCGTTCTTCG ATCCAGCTGC GCCATCACGG ATTTCTTTGG 
GCAAAAGATC TCTCTGTGCC TGATTCGATT CTTGATTTCG GTTTCAGCAT TCCGGTTTAC 
GGAGATCATA TCGCGGTATT TCCCATTCTC ATGGGGGTGA CTGTTTTCAT ACAGCAGAAA 
ATCACGCCAA CGACTCAGAG CAATGATCAG ATGAAGATGA TGCTCTATAT TTTCCCTGTA 
ACGATGCTGC TGTTTTTTAA TAATCTGCCT GCCGGGCTCG GTCTCTACTA TCTGATGTTC 
AACGTGTTCA GCGTGGCGCA GCAGTTTTAC ATCAACAGCA CAACGTCAAC TGATGATGTA 
CCGAAAGCTG CGCTTGAGGC TGCGTCGGCA GCAGTTGCTT CTAAAAAGAA AAAAGGGAGC 
AGTAAAAAGT AA
 
Protein sequence
MDRNSVTGLA LIALIMIVWL QFMSPDKKSV QPDNRPKAQT TATVSQEKTE APAALRSDTF 
GVFAEASTGA EELVTVDNEL FTMTLSSKGA TIKSVVLKNH LDGQLKPFDL VSSHDKGALS 
LLFLNVEGKK IDTRELYFRL VSQEKKQTLS GKKIAVVRYR LDINPQQAID IVYRFSGNSY 
KVDYDVKLTG FDNALAGNEY QLQWDGGLAY SEKNREDESH NALAGAFLGG SLVKIDASKE 
NQTYREEQSG EAGWVAVRNK YFVAALIPGS KTEGIYLEGK KGSGHFEEYL ASLKMSVPST 
EKVASNHFSL YIGPLDYNTV KTLDANLEKI MDFGWDWLTR PFAEYVILPV FTWMNGFISN 
YGLIIIIFAL LIKLVTYPLS MASTKSMKKM AALQPMLKEL QEKYKDNPAK LQSELGRIYK 
EAGVNPLGGC LPVVLQMPLL FAMFYVFRSS IQLRHHGFLW AKDLSVPDSI LDFGFSIPVY 
GDHIAVFPIL MGVTVFIQQK ITPTTQSNDQ MKMMLYIFPV TMLLFFNNLP AGLGLYYLMF 
NVFSVAQQFY INSTTSTDDV PKAALEAASA AVASKKKKGS SKK