| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_2518 |
|---|
| Symbol | |
|---|
| ID | 6355137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 2757198 |
|---|
| End bp | 2758646 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642670106 |
|---|
| Product | RNA methyltransferase, TrmA family |
|---|
| Protein accession | YP_001944515 |
|---|
| Protein GI | 189347986 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.391256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGTA TGGAACAGAC TGCCCTGAAA AAAGGTGACG TTATAGAGTT GACGGTTACC
GATTTTGCCG ACAAGGATCG CTGTTTCGGA CGTCTTGATT GTGGTATCAG CGTAATGGTC
ACCGGAATGC TGGCTCCAGG CGACCGGGTG AAAGCCCTTA TCAGAAAGGT GAAGCAACGC
TATATCGACG CTTCAGCCGT TGAAGTGACG ATGTCGTCTC CCGACCGGGT AGAACCGGTA
TGTTCATATT TCGGGGTTTG CGGAGGGTGT AAGCTCATGC ATATCTCATA CGAGGCGCAG
TTGCGTTACA AGCGGAAAAA GGTCATTGAC GATCTTGTAC ATATCGGAGG TTTTACCGAT
CCTCCCGTAC ATCCCGTGCT CCCTGCCAGG CACTCCTGTC ATTACCGCAA CAAGGTCGAG
CTTTCCTGTT CGAGTATCCG TTATCTTATG CCGGAAGAGC TTTCGCAGGA GGAGCTTTCC
CGTTCGAGGG ATTTCGGTCT GGGGTTTCAT GCTCCGGGAA ACTACGAGAA GGTGATCGAC
ATCGACTACT GCTATCTGGC CAACGAGCCG ATGAACAGCG CGGTCAGGCT GACCCGTGAA
TTTGCTCTCG CCAATCGCCT TGCCCCTTAT GCTGTCAAAG CGCATGCAGG CTTTCTGCGC
AATCTGGTAC TGCGCACAAG CGAATATACC GGGAGGCTGA TGGTCAATAT CGTTACTTCA
TGGCATGACC GCGAATTGAT GGCCCGTTAT GCAGATATGC TTGTTGCTGC GCTTCCGGAT
CAGGATCTGA CGGTTGTAAA CAATGTCACG ACAAAAAAGA ACACGGTTGC TACAGGTGAG
CAGGAGTTCG TGGTTTACGG GGAGGGTGCG CTGACGGAAC GGCTTGGCGA ACTCGATTTC
AGGGTATCTG CGAATTCGTT TTTCCAGACA AACTCGTCAC AGGCAGCAGT TCTCTACGCT
GAGATCCTCA AAGTGGCGGG AATCAGGCCG GATGATACCG TTTATGATCT TTACTGCGGG
ACCGGCACCA TAACGCTCTA TCTTGCAAGG CATTGTCGGA TGGCGGCAGG GTTGGAGGTT
GTAGAGAGTT CACTCAGTGA TGCGGCAAAG AACGCCGATT TGAATGGCAT CACCAATGCT
GTGTTTTTTC AGACAGATCT GAAAGATTTT CATGCTATGC TTCAGAAACT TGAAAATTAT
GATGCTCCTG GTGTTATTGT GACGGACCCT CCAAGAGCGG GCATGCATCC GAAAGCTCTT
GAAACCATGC TCAAACTCAG AGCCCGTACG ATCGTCTATG TGAGCTGCAA TCCTTCGAAT
CTTGCCAGAG ACGGCAAGGA GATCTCCCGT TACGGATACC GGTTGGTTTC AGTGCAGCCG
GTCGATATGT TTCCTCACAC GGTGCATGTA GAAAGCGTTG CCTGTTTCGA GAGGATCGAT
CATTACTGA
|
|---|
| Protein sequence | MIRMEQTALK KGDVIELTVT DFADKDRCFG RLDCGISVMV TGMLAPGDRV KALIRKVKQR
YIDASAVEVT MSSPDRVEPV CSYFGVCGGC KLMHISYEAQ LRYKRKKVID DLVHIGGFTD
PPVHPVLPAR HSCHYRNKVE LSCSSIRYLM PEELSQEELS RSRDFGLGFH APGNYEKVID
IDYCYLANEP MNSAVRLTRE FALANRLAPY AVKAHAGFLR NLVLRTSEYT GRLMVNIVTS
WHDRELMARY ADMLVAALPD QDLTVVNNVT TKKNTVATGE QEFVVYGEGA LTERLGELDF
RVSANSFFQT NSSQAAVLYA EILKVAGIRP DDTVYDLYCG TGTITLYLAR HCRMAAGLEV
VESSLSDAAK NADLNGITNA VFFQTDLKDF HAMLQKLENY DAPGVIVTDP PRAGMHPKAL
ETMLKLRART IVYVSCNPSN LARDGKEISR YGYRLVSVQP VDMFPHTVHV ESVACFERID
HY
|
|---|
| |