Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Clim_2461 |
Symbol | |
ID | 6354731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium limicola DSM 245 |
Kingdom | Bacteria |
Replicon accession | NC_010803 |
Strand | - |
Start bp | 2694087 |
End bp | 2698298 |
Gene Length | 4212 bp |
Protein Length | 1403 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642670050 |
Product | type I site-specific deoxyribonuclease, HsdR family |
Protein accession | YP_001944460 |
Protein GI | 189347931 |
COG category | [S] Function unknown [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [COG2852] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAGCA ACCCCTACAC CGAAGACCAG CTTGTCGAGC AGCCCGCTAT CGGGTTGTTT GCGGAGCTTG GCTGGGCAAC GGTGTCGGCG TTGGATGAGA CATTCGGCGT TGCCGAACCC TCACCCGGCC ACTTTGGCCA CTCTCTCCCG GAGGACGAGG GTAATGGAAA TTCCCGGATA TCATTAGGGC GGGAGACGAA GGGGGATGTG GTGCTGGCGT CACGGTTGGG TGTGGCGTTG GTGCGCTTGA ACCCTTTGCT GCCGCCCGAG GCAATCACCG CCGCAATGGA TGAATTGACT CGCGACCGTT CAGCCATGCT CCTGGAGGCA GCGAATCGCG AAGTCTATCT GCTGCTCAAG GAGGGGATTC GCGTCAGCGT TGCTGACACC GAACCCTCAC CCGGTTTCCC TCTCCCGGAG GGCGAGGGTG CAGAAGCACC TCCATCTACC TTTGGGAGAA GGGCAGGAAA TAACGATTCG CTACAGAAAT ATGGAGGGCA GAAGATTGTC CGTGTGAGAG TTGTTGATTG GGAGCATCCG GAGAACAACG ATTTTCTGCT GGTGAGCCAG TTCAGCGTTA CAGGACAGCT CTACACCTGC CGCCCTGATC TGGTCGGGTT CGTGAACGGG CTGCCGATGG TGGTGATCGA GCTGAAAAAG CCCGGTGTGC CTGCCCGGAC GGCTTTCGAC GAGAATCTCA GGCACTACAA GGAGCAGATT CCTTCGCTTT TCTGGTATAA TGCGCTGCTT ATCGCTTCGA ACGGTACGGA AAGCCGTGTC GGTTCGCTCA CTGCGGATTG GGAACGGTTT TTCGAGTGGA AGCGCATCGC GCGGGAAAAC GAGCCCCGCA GGGTGTCGCT GGAGGTGATG CTTCGCGGCA CGTGCGACCG CAGTCGTTTT CTCGACCTCG TTGAGAACTT TACGCTTTTT TCGGAGCATA AGGCGGGATT TGCAACTCCC GCCACCCTCA CCCCAACCCC TCTCCCAGGG GTAGAGGGGC GGAGTAAAAG CGGGCTGGTG AAGATTATCG GGCAGAATCA CCAGTTTCTC GGGGTCAATG CGGCAATTGC GTCTTTACTC AGGATTCGTA AAGAATATGC AGTTGCCGCC ACCCTCACCC CAACCCCTCT CCCAGAGGTA GAGGGGCAAT ATCGTGGCGG TTTTTATTAT TCGGGACTCG TTGAACGCGC GAGGGAATTA CGGCAGCAGC AGACACCGGC AGAGGATATC GTATGGGAGC TTTTGCGTGA CCATCGGTTC GAGGGGCTGA AGTTTCGTCG TCAACACCAG ATCGGAAATT ATATTGCAGA TTTCTTTTGT TCAGAGCATA AACTTGTTGT CGAAGTTGAT GGTGACGTTC ATCGTTCGCC GGAGGTGGTT GCGAAGGATT CACAGCGGGA TGCATATTTG CGTTCTCTTG GTTATACCGT TATTCGGTTT GGGAATCAGT TGGTATTGAA TAACCCTGCA GAGTTTCTGA ATCAAATCAG GGCGGCATTG CAGCTCCCCT CTACCACTGG GAGAGGGGCT GGGGGTGAGG GGAACACACC AGGATCGAAT GGGATTGGTG AATCATTGAC GCACCCCTCT ACCGCTGGGA GAGGGGCCGG GGGTGAGGGG AACACACCAG GACCGAAAGT GATTGGTGCA GCATTGACTT ACCCCTCTAC CACTGGGAGA GGGGCCGGGG GTGAGGGGAA CACACCAAGA CCGAAAGTGA TTGGTGCAGC ATTGACTTAC CCCTCTACCA CTGGGAGAGG GGCTGGGGGT GAGGGGAACA CACCAAGACC GAATGGGATT GGTGTGTTCT GGCAGACGCA GGGCAGCGGC AAGAGTTTTT CGATGGTCTT TTTTGCCCAA AAGGTGCTTC GAAAGGTTGC GGGCAACTGG ACCTTCGTGG TGGTGACCGA CCGTATTGAG CTTGACGAGC AGATAGCAAA AACCTTCAAG GCTGCCGGTG CAGTAAGCAA GGCCGAAGGC GATGCATGCC ACGCTTCGAG CGGCGATCAT CTCCGGCAAC TGCTGCGGGG CAATCACCGC TACGTCTTTA CGCTGATCCA TAAGTTTCGT TCCGAAACAC CCTCACCCCG TCCCTCTCCC AAAGGTAGAG GGGGGGAAGA AGTATGTTCC GAAATACCCT CACTCGGGTT CTCTCCCACA GGTAGAGGGG GGGAGGGAAT CTGTTCCGAA ACACCGGGTG CGGGTAACAA TGGAATTATG CCAGTGCTGA GTGACAGGGC GGATATTATT GTTTTGACAG ACGAGGCGCA CCGCAGCCAG TACGACACGC TGGCGCTGAA TATGCGTTCG GCTCTTCCCA ATGCCATGTT TCTCGCCTTT ACCGGTACAC CGCTCATTGC CGGAGAGGAG CGCACCAAAG AGGTTTTCGG CGATTACGTA TCCATTTACG ACTTCCAGCA GTCCGTCGAG GACGGAGCTA CGGTTCCGCT TTTCTACGAG AACCGTACGC CCGAGCTGCA ACTGGTCAAT CCCGACCTGA ACGACGATAT CTACCGGCTT ATCGAGGATG CCGAACTCGA TCCCGATCAG GAATCGAAGC TTGAGCGGGA GCTGAACCGA CAGTATCATT TGCTGACGCG CGACGACCGG CTTGATACCG TTGCAAAGGA CATCGTGCGG CATTTTCTCG GACGGGGGTT CATCGGCAAG GCGATGATGG TCTCTATCGA CAAGGCCACC GCAATCAGGA TGTACGACAA GGTGCAACGG TTCTGGATGG AAGAGACGGG GCTTGTCCGG CAGCAGCTTG TCCGTTATGA TCTTTCGTCT GAAAGAAAAG GGGAACTGCA GAAGCGGCTT CAGGTGCTTG AGAGCACCGA CATGGCCGTG ATCGTTTCTC CCGGCCAGAA CGAAATCGGG CAGATGCAGC AGATCGGCCT CGATATTGTG AAGCACCGCA AGCGCATGGT CGAGTCGCAG CCGGCTCTGG ATGAGAAGTT CAAGGACAGC GACGATACGC TGAGAATCGT ATTTGTTTGC GCCATGTGGC TGACCGGTTT TGACGCGCCG AGCTGTTCGA CGGTCTATCT CGACAAACCT ATGCGCAACC ATACGCTCAT GCAGACTATA GCGCGGGCAA ACCGCGTTTT TCCCGGCAAG CACAGCGGCA TGATTGTGGA TTACGCGAAT GTGTTCGCCT CGCTTGAAAA GGCGCTTGCT ATCTACGGTG CAGGGAAGGG CGGTCATAAT CCGGTGAGGG GGAAAGATGC GCTTGTAGAA GAATTACGCA AGGCGGTCGA GCTGGCAACA GCCTTCTGCA TGGAACATGG GGTGCATCTT GCCGGAATCG AAGAGGCGGC TTCAGGTATG GAACGGCTGC AGCGTATCGA GGATGCGGTA AACGCCCTGA TTGGGGATAC CCTGCGGCGG GAGTTTTTCG GCCATGAACG TCTTGTCCGT ACGCTCTACC AGGCGGTAAA ACCCGATCCA GCTGCGATTG CTTTTTCGGA GCGGGTGGCG TGTATTGCGG CAATTGCTGA AGCGATACGG GGGAAGCTGA ATCCCGTTGC GCCGGATATT TCCACAATCA TGCAGGGAAT CGGCAGATTG CTTGACGAAT CCATTACCGG TCATGCTATC CGCGAGTCAG GGCCGCCGGT GCTCGATCTC TCGAAAATCA ATTTCAAGGC GCTCTCTGAT CGGTTCAGGC AATCGAAGCA CAGGAACACC GATCTGGAAA TGCTCAAGGC CGCGATTAAC GCCAAGCTGG AAAACATGAT TCGCCTCAAT CGCACAAGGG CGGATTTTGC CGGGAAGTTC GAAGAATTGA TTGCGGGCTA CAATGCGGGC AGTCGAAGCA TCGAAGATCT CTTTGACGAA CTCCTCAAGC TGTCGCTCAG CCTGAGCGAT GAGGAGCAGC GCCATGTTCG GGAAAATATG AACGAAGAGG AGCTGGTTAT TTTCGACATC CTCACCCGTC CGGCACCGGA ACTCAATACC GATGAACGCA GCGAAGTGAA AAGGGTTGCC CGCGAACTGC TTGTCAAGAT CAAGGGTCTT CTGGTGCTGA ACTGGCGGCA AAAAACAGAG GCACGTTCCA GGCTGAAGCT CACCATCGAG GATGCCCTCG ACCAGGGCCT TCCCCGAGCC TATACGCCGG AAATCTACCG GCAGAAATGC TCCGCCGTAT TCGAACATGT CTACGAATCC TATCCCGAAC GCGATGCGGG GGTTTACGCC GAGGTTGAGT GA
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Protein sequence | MTSNPYTEDQ LVEQPAIGLF AELGWATVSA LDETFGVAEP SPGHFGHSLP EDEGNGNSRI SLGRETKGDV VLASRLGVAL VRLNPLLPPE AITAAMDELT RDRSAMLLEA ANREVYLLLK EGIRVSVADT EPSPGFPLPE GEGAEAPPST FGRRAGNNDS LQKYGGQKIV RVRVVDWEHP ENNDFLLVSQ FSVTGQLYTC RPDLVGFVNG LPMVVIELKK PGVPARTAFD ENLRHYKEQI PSLFWYNALL IASNGTESRV GSLTADWERF FEWKRIAREN EPRRVSLEVM LRGTCDRSRF LDLVENFTLF SEHKAGFATP ATLTPTPLPG VEGRSKSGLV KIIGQNHQFL GVNAAIASLL RIRKEYAVAA TLTPTPLPEV EGQYRGGFYY SGLVERAREL RQQQTPAEDI VWELLRDHRF EGLKFRRQHQ IGNYIADFFC SEHKLVVEVD GDVHRSPEVV AKDSQRDAYL RSLGYTVIRF GNQLVLNNPA EFLNQIRAAL QLPSTTGRGA GGEGNTPGSN GIGESLTHPS TAGRGAGGEG NTPGPKVIGA ALTYPSTTGR GAGGEGNTPR PKVIGAALTY PSTTGRGAGG EGNTPRPNGI GVFWQTQGSG KSFSMVFFAQ KVLRKVAGNW TFVVVTDRIE LDEQIAKTFK AAGAVSKAEG DACHASSGDH LRQLLRGNHR YVFTLIHKFR SETPSPRPSP KGRGGEEVCS EIPSLGFSPT GRGGEGICSE TPGAGNNGIM PVLSDRADII VLTDEAHRSQ YDTLALNMRS ALPNAMFLAF TGTPLIAGEE RTKEVFGDYV SIYDFQQSVE DGATVPLFYE NRTPELQLVN PDLNDDIYRL IEDAELDPDQ ESKLERELNR QYHLLTRDDR LDTVAKDIVR HFLGRGFIGK AMMVSIDKAT AIRMYDKVQR FWMEETGLVR QQLVRYDLSS ERKGELQKRL QVLESTDMAV IVSPGQNEIG QMQQIGLDIV KHRKRMVESQ PALDEKFKDS DDTLRIVFVC AMWLTGFDAP SCSTVYLDKP MRNHTLMQTI ARANRVFPGK HSGMIVDYAN VFASLEKALA IYGAGKGGHN PVRGKDALVE ELRKAVELAT AFCMEHGVHL AGIEEAASGM ERLQRIEDAV NALIGDTLRR EFFGHERLVR TLYQAVKPDP AAIAFSERVA CIAAIAEAIR GKLNPVAPDI STIMQGIGRL LDESITGHAI RESGPPVLDL SKINFKALSD RFRQSKHRNT DLEMLKAAIN AKLENMIRLN RTRADFAGKF EELIAGYNAG SRSIEDLFDE LLKLSLSLSD EEQRHVRENM NEEELVIFDI LTRPAPELNT DERSEVKRVA RELLVKIKGL LVLNWRQKTE ARSRLKLTIE DALDQGLPRA YTPEIYRQKC SAVFEHVYES YPERDAGVYA EVE
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