Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Clim_2433 |
Symbol | |
ID | 6355904 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium limicola DSM 245 |
Kingdom | Bacteria |
Replicon accession | NC_010803 |
Strand | + |
Start bp | 2664406 |
End bp | 2666802 |
Gene Length | 2397 bp |
Protein Length | 798 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642670023 |
Product | DNA topoisomerase I |
Protein accession | YP_001944433 |
Protein GI | 189347904 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.336729 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCATCAA AAACAGAAGC TCTTTCAGCC AGAAACAGAA CCCTTATTGT CGTTGAATCT CCTTCAAAGG CAAAAACCAT CAACAAATAT CTGGGCGACC GCTACACGGT TTTCGCGTCG GTGGGGCACA TCAAAGATCT GCCGAAACGG GAAATCGGCC TTGATTTCGA TCATAACTAC GAACCCCGCT ATGAGGTCAT TGCCGGAAAG GAAAAAGTTG TCCGACAGTT GAAAAAACTT GCCGGAGAGG CCGACTCGGT ACTGATCGCT ACTGACCCTG ACCGCGAAGG CGAAGCTATA GCCTGGCATA TTTCCAACGA AATCGAAGCT GCACGAAAAC CGGTTTTCAG GGTTTTGTTC AATGAAATTA CGAAAAATGC GATTCTTGCA GCAATAAGCG AACCTCGCCA GATCGATTAC CGTCTGGTGC GATCCCAGCA GACCCGTCAG GGACTCGACA AGATCGTGGG ATACAAGATC AGTCCTTTCC TGTGGAATGT CGTGCTGCGA GGCCTCTCCG CAGGCAGGGT ACAATCGGTT GCGCTCAGAC TTATCTGCGA ACGGGAAGAG GAGATCAACC GGTTCGAAAT TCAGGAGTAC TGGACGGTTT CCGCCGACTT TGCAACGGCA AAAGGAGAAA TATTCAAGGC TAAACTGGTC AAGGTTGACG GAGGCAAACC GGAACTCTCC AGTCAGGAGC AGGCCGAAGC CGCAGCTTCG CTTGTAAGAA ACCGCCTCTA TGCTGTCGGG GACATTACGG CTAAAGCCCA GCAGCGCAAA GCTCCGCTGC CATTTACCAC CTCGCTGCTC CAGCAGGCTG CTTCAAACCA GCTCGGGTTC GGATCACAGA AAACCATGCG TATTGCCCAG CAGCTTTACG AAGGCATAGA TCTCGGAAGC GAAGGGGCAA CAGGCCTGAT TACTTACATG CGTACCGATT CGACCCGTAT CGGCTCCGAA GCCGTTGCGG AAGCCCATAA ATATATACGT GCAGTATTCG GTTCCGAATA TACCGGTTAC GGCAGTTCGG CGAAATCCCC GAAAAATGCC CAGGACGCCC ACGAAGCTAT CAGGCCAACA TCTATCGAAA GAAAGCCCGA AGCGATGAAA CCCTATCTTT CCGCAGACCA GTATCGCCTC TATGAGCTTA TCTGGAAACG GTTTCTTGCC GCCATGATGG CCCCGGCGAA AATCGAACAG ACAAAGGTTG ATGTCGAAGA TCACGAACGC CGCATTGTGT TCCGGGCGAA CGGAAGCCGC GTGCTTTTCC CCGGCTTCAT GCGGGTGTAT GACGATCAGC AGGAGCTTGA GTATGAAGCC CGTACATCGA CAAAGGAGGA TGTCGAAAAA GAACAGACCG TCAAACTTCC TGATACGCTT GCCGCACGGG ACAGCCTGAA TCTTGACGAA ATCGAACAGA AACAGAGTTT TACCCGTCCT CCTGCCCGTT ACAGTGAAGC TACGCTGGTA AAAGATCTCG ACAACTACGG CATCGGACGC CCTTCGACCT ATGCCTCGAT ATTTTCCACC CTGCAGGATC GTCGCTATGT TGTATTGCAG AAAAAAAAAA TAGCGCCTAC CGATCTCGGA AAAGATGTCT CACAGATTCT TGTGGCTAAT TTTCCGGACA TCTTCAATAT CCGCTTTACC GCGTTCATGG AGGATGAACT GGACAAAGTG GCGGCAGGTG ATGACGAATA TGAAAAGGTG CTCGACAGCT TTTACCGACC CCTGGAAACC GCACTCAGCC TGAGAAAGAA TGACCCGCTC ATTCCACAGA ACATGAATGC GGAAACCTGC GACAAGTGCG GTGAGGGCCG AATGATCATC AAATGGACGG CCAGCGGAAA ATTCCTTGGC TGCTCACGAT ACCCTGCCTG CAAAAACATC AAACCGATCA GCTCGACAAA GGCAAAACCG AAAGAAACCG GCATAAAATG CCCCTCCTGC AGTGACGGCC AGATGCTCCT CCGCGACGGG CGGCTCGGCC CGTTCCTTGC ATGTTCAGGC TATCCCAAAT GCAACACCCT GCTCAATCTC AGCAAACAGC GCCATATCGA ACCGCTTAAA ACTCCGCCGG TTCAGACCGA TCTCCCCTGT CCGAAATGCG GAGCGCCTCT GTATCTCAGA AGCGGTAAAC GGGGGTTATG GCTGGGTTGC TCAAAATTTC CTAAATGCCG GGGACGCCTT GCATGGAACT CGCTTGACCC TGCTCTTCAG CTGCACTGGG AAGGGGTTAT GGCAGAACAC CGCAAAGCCC ATCCGGATGT CGTGCTGACC ATGACCGATG GGCGACCGGT TCCAATGACT CTTCCTGTAG ACGACATAAT GGCAAGAGCA GAGGAGAACG GTCTGATTGC ACCTGTAACC GAAGAGAATG AGGGCGTCAC AGTATGA
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Protein sequence | MASKTEALSA RNRTLIVVES PSKAKTINKY LGDRYTVFAS VGHIKDLPKR EIGLDFDHNY EPRYEVIAGK EKVVRQLKKL AGEADSVLIA TDPDREGEAI AWHISNEIEA ARKPVFRVLF NEITKNAILA AISEPRQIDY RLVRSQQTRQ GLDKIVGYKI SPFLWNVVLR GLSAGRVQSV ALRLICEREE EINRFEIQEY WTVSADFATA KGEIFKAKLV KVDGGKPELS SQEQAEAAAS LVRNRLYAVG DITAKAQQRK APLPFTTSLL QQAASNQLGF GSQKTMRIAQ QLYEGIDLGS EGATGLITYM RTDSTRIGSE AVAEAHKYIR AVFGSEYTGY GSSAKSPKNA QDAHEAIRPT SIERKPEAMK PYLSADQYRL YELIWKRFLA AMMAPAKIEQ TKVDVEDHER RIVFRANGSR VLFPGFMRVY DDQQELEYEA RTSTKEDVEK EQTVKLPDTL AARDSLNLDE IEQKQSFTRP PARYSEATLV KDLDNYGIGR PSTYASIFST LQDRRYVVLQ KKKIAPTDLG KDVSQILVAN FPDIFNIRFT AFMEDELDKV AAGDDEYEKV LDSFYRPLET ALSLRKNDPL IPQNMNAETC DKCGEGRMII KWTASGKFLG CSRYPACKNI KPISSTKAKP KETGIKCPSC SDGQMLLRDG RLGPFLACSG YPKCNTLLNL SKQRHIEPLK TPPVQTDLPC PKCGAPLYLR SGKRGLWLGC SKFPKCRGRL AWNSLDPALQ LHWEGVMAEH RKAHPDVVLT MTDGRPVPMT LPVDDIMARA EENGLIAPVT EENEGVTV
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