Gene Clim_2212 details

Gene Information

• Locus tag: Clim_2212
• Symbol: rpsE
• ID: 6355234
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: -
• Start bp: 2448407
• End bp: 2448925
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 642669803
• Product: 30S ribosomal protein S5
• Protein accession: YP_001944215
• Protein GI: 189347686
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.000015537
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAAAA TATCTGCTAA GAATATCAGG CCCGGTGAAT TGAATCTGAA AGAGAAGCTG 
GTTCATATCA ATAGAACGGC TAAAGTTGTC AAAGGCGGCA AACGCTTTGG TTTTAATGCC 
ATTGTTGTTG TCGGCGACAG AGAGGGGCAT GTAGGTTACG GGCTTGGAAA AGCAAACGAG 
GTTCAGGATG CAATTGCCAA AGGAGTCGAG GACGGCAAGA AGAATGTGAT CAAGGTTCCT 
ATTGTCAAAG GGACCATTCC TCATCAGGTT ATTGCAAAAT ACGGTTCGGC AAAAGTTTTG 
ATGAAGCCTG CAACTCCCGG TACCGGATTG ATTGCCGGCG GAGCTGTTCG TGCTGTTCTT 
GAAATGGCCG GAGTCCATGA TGTGCTGACC AAATCGCTCG GTTCGTCAAA TCCGCACAAT 
GTGGTAAAGG CAGCAATAAA AGGATTACAG AGCATGTCCG ATGCCCTTGA AGTTGCCGAG 
AGACGTTCGA AGAGCCTTAA AGAGGTTTTT GAAAGCTAA 

 

Protein sequence

MAKISAKNIR PGELNLKEKL VHINRTAKVV KGGKRFGFNA IVVVGDREGH VGYGLGKANE 
VQDAIAKGVE DGKKNVIKVP IVKGTIPHQV IAKYGSAKVL MKPATPGTGL IAGGAVRAVL 
EMAGVHDVLT KSLGSSNPHN VVKAAIKGLQ SMSDALEVAE RRSKSLKEVF ES