Gene Clim_2153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_2153 
Symbol 
ID6355947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp2373062 
End bp2375548 
Gene Length2487 bp 
Protein Length828 aa 
Translation table11 
GC content58% 
IMG OID642669744 
ProductTonB-dependent receptor 
Protein accessionYP_001944156 
Protein GI189347627 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.453581 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAA AAAATGCGCA AGCGTACCCC CTTGTCCGTT TTGTGCTTTC AGCATTCTGC 
CTGCTGGCGC TGCTGGTGCC GCTCCCCTCA TATGGAGCCG ATACCGGATC GGTAAAAGGC
AAAATCATCG ACAAAGCTGA CGGGGAGGGC GTTTACGGAG CATCAGTAAC CGTAGCAGGA
ACAACCATCG GTACCGCTAC CGACATGAAT GGCAACTTCA CCATCAGCGG TGTACCCGCA
AAACAGCAGA AAATTTCCGT CTCCATCGTC GGCTACGCAC CCGCGAGTCA GGTCGTGAGC
GTCGGCGCAG GCCAGACCGC AGTTGTAAAC CTCTCGCTCG GCCAGACCAC CATCATGGCC
TCGGAAGTGG TTGTCGGCGC CGCGCTCTAC AAACAGGACC GCCTCGACGT GCCCACAACC
ACCAACGTGG TGTCGAAGGA AAAAATCAGG GAGGAACCCA ACCCCTCTCT CGACAAAAAC
CTTGAAACCG TTCCGGGCGT CAACATCAAT CGTTCGAGCG GTTACAGCGC TTCGACGGTG
CAGATCCGCG GATCCAATAC CTTCCAGGGC GGCGGAATCG GCACCCGCGT AGCGGCCTTC
TACGACGGTA TTCCGCTCAG CACGCCTGAA ACCGGCGGCA TCGTCTGGAC TAACATCAAC
ATGAACTCGG CCGACAAGAT CGAGGTCGTC AAGGGCGCAT CGACCACCCT CTACGGCTCA
GGAGCCATGG GCGGCGTCGT GAGCGTGGCC GGCCACCTGC CCGACAAATT TGAGGTGAAG
GCTGGCGCGA GCGCGGGCTT CTACGACAAG ACGCCGGCCG AAGACCAAAG CGCATACCGC
GACGGTTACA CCCCGTGGCT CTGGAACACC TACGTCGGCA TCGGCAACAA GAGCGGCAAG
TGGAACTACA GCCTGCTCTA CTCGCATAGC GAAGACGACG GCTACCGTGA AAACTCGCAG
ACCCTGCTGA ACGACGTCAA ACTGAAGGCG CGCTACGACA TCGACGCCAC CCAGTACCTG
CAGCTTTCGG CATCCTACAG TGAAACCGAA GCCGGCTATG TCAGCACTTG GCCGTACGAC
ATTGTTGGAA GCGGCACATT TGTCGCTAAG CCGCAGTTTG CCTACGACCT CGCCGATTCG
GTTTACGCCG ACGACATCGT CAAGAGGAAG GACATCCTTG CCGGCCTGAC CTACTCGAAC
ATGCTGAGCG ACAAGCTGAC CCTTGAAGCG AGAATGTACT ACACCTACAA CAAGTACCGG
ATAGATTACA ACCCGACCTC TGTTACTCAG CTCTATCCGT ATCTCTATCC GGGATCCATA
TACAATGGGT TCATCTATAA CCGCGATCCC GGCGAATTCA ACGAGAACCG TTCGAGCCGT
TACGGCGCAG GCGTGAAACT CGACTGGCGT GTGGCCGACA GCCACCGGCT GCTCTTCGGC
GTGGACGGCA ACATCGTTGA CGTCGAATCG ACCCAGTACA CCTCAGGCCT GCCTGTAGCG
GGAGAGTTCG GATCCATTCA GGAGAAAAAC GCCGCAGTCT TCGTGCAGGA CGAGTGGAAG
ATCACCGACC GCCTGACCGC CCTGCTCTCG CTCCGCTACG ACTGGAGCGG CATTGATGCC
GATGAGGTGA CATTCAGGGA CTACTCGGTT ACTCCGGGTA ATAATAACGA CGGTCCTATT
CTGACCCAGT CCATCGAGAA CCCTTCGGTC GACGCCATCA GCCCGCGTAT CGCCCTCAAC
TACAAGGCCA TGGACGACAT GAGCTTCCGC GCCTCGTGGG GCAAGAGCTT CCGCGCGCCG
ACGCTCGCCG AGCGGTTCGT GCGTGACGCA GGCCTCTTCA TGGGCAACCC GAACCCGGCG
CTCGACAAGG AGACCATGAC CGGATGGGAA GTGGGCGTAT ATAAGCAGTT CGGCGACAAG
CTTTCGCTGG ACATCTCCGC CTACCTGAAC GACTACGACA ACCTGATCGA ATCAAGAAAC
CTTAATACAG CTACAGGCTT TCCTGTTGTT TTCGAATACC AGAACATCGC GAAAGCGCGC
ATCTGGGGCA TCGAAACCAG CCTGAACTAC CGGCCTAACA ACCACTGGAA CTTCAGCCTC
GGCTACGCCT ACATGAACGC CAAGGACAAG ACCGGCGACG CCGCATCTCT TGCCGGCAAC
GACAACCCCG ATCCCGAGTG GCTGGCCTAT CGTCCCGAGC ACACCGGCTC GGCAAGCGTG
AACTGGAAAG CCAACGACGA CCTGACGCTG AACCTGACCG GACGGTACGT CGGCAAGTAC
AAGGCCGTGA GCACCTACCC GAACCCCGAG GGTGATAACT ACCCCGGCGA CTTCGTGGTG
TTCAACCTCG GCATGAAGTA CCAGCTTACC GAGAACATCA GCACCACCCT GCTCTGCAAG
AACATCGGCA ACGTGCAGTA TGAAGAAGCC GAATGGTTCC GCGCTCCGGG CAGAAGCTTC
GTACTCGGTG TTGACCTGAC CTACTGA
 
Protein sequence
MKTKNAQAYP LVRFVLSAFC LLALLVPLPS YGADTGSVKG KIIDKADGEG VYGASVTVAG 
TTIGTATDMN GNFTISGVPA KQQKISVSIV GYAPASQVVS VGAGQTAVVN LSLGQTTIMA
SEVVVGAALY KQDRLDVPTT TNVVSKEKIR EEPNPSLDKN LETVPGVNIN RSSGYSASTV
QIRGSNTFQG GGIGTRVAAF YDGIPLSTPE TGGIVWTNIN MNSADKIEVV KGASTTLYGS
GAMGGVVSVA GHLPDKFEVK AGASAGFYDK TPAEDQSAYR DGYTPWLWNT YVGIGNKSGK
WNYSLLYSHS EDDGYRENSQ TLLNDVKLKA RYDIDATQYL QLSASYSETE AGYVSTWPYD
IVGSGTFVAK PQFAYDLADS VYADDIVKRK DILAGLTYSN MLSDKLTLEA RMYYTYNKYR
IDYNPTSVTQ LYPYLYPGSI YNGFIYNRDP GEFNENRSSR YGAGVKLDWR VADSHRLLFG
VDGNIVDVES TQYTSGLPVA GEFGSIQEKN AAVFVQDEWK ITDRLTALLS LRYDWSGIDA
DEVTFRDYSV TPGNNNDGPI LTQSIENPSV DAISPRIALN YKAMDDMSFR ASWGKSFRAP
TLAERFVRDA GLFMGNPNPA LDKETMTGWE VGVYKQFGDK LSLDISAYLN DYDNLIESRN
LNTATGFPVV FEYQNIAKAR IWGIETSLNY RPNNHWNFSL GYAYMNAKDK TGDAASLAGN
DNPDPEWLAY RPEHTGSASV NWKANDDLTL NLTGRYVGKY KAVSTYPNPE GDNYPGDFVV
FNLGMKYQLT ENISTTLLCK NIGNVQYEEA EWFRAPGRSF VLGVDLTY