| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_2062 |
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| Symbol | metH |
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| ID | 6355040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | + |
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| Start bp | 2272514 |
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| End bp | 2276200 |
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| Gene Length | 3687 bp |
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| Protein Length | 1228 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642669658 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001944070 |
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| Protein GI | 189347541 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.458303 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACA CTCTTTTACA GCTCCTCGAG CAGCGCATTC TGGTGCTCGA CGGTGCCATG
GGCACCATGA TACAGCGCCA CAAGCTGCAG GAAGCCGATT ACCGGGGCGA ACGGTTCGCC
TCGCACGACC ACCCGCTGAT CGGAAACAAC GATATGCTCG TGCTCACGCA GCCCGACATC
ATTTATGCCA TCCACTGCGA TTTTCTTGAA GCCGGTTCGG ACATCATTGA AACCAACACC
TTCAACGCCA ATCCAATTTC GCAGGGTGAC TACAACGCCG TCGAGCTTGT CAGGGAACTG
AACCTCGAAG CTGCGCGGCT CGCCAGAAAA GCCGCCGATG CATACAGTGC GAAAACTCCC
GACAAGCCGC GCTTTGTCGC CGGCTCGATC GGCCCGACAA ACAAAACCCT CTCCCTCTCG
CCGGACGTGA ACAATCCCGG CTACCGGGCG GTCACCTTCC GCGAGGTGGT CGATAACTAC
ATCGTACAGC TCGAAGGACT CATGGAGGGA GGCGTGGACC TGCTCCTGAT AGAGACCGTC
TTCGACACCC TGAACTGCAA AGCGGCGCTT TTCGCCGTCG AGGAGTATTT CAACGCCATC
GGCAGAAGAG TGCCGGTAAT GGTTTCGGGA ACCGTAGTGG ACGCAAGCGG AAGAACTCTT
TCCGGCCAGA CCACCGAAGC CTTCTGGATT TCCATCGCGC ATATGCCAGA CCTGATCTCC
GTAGGCCTCA ACTGCGCGCT CGGTTCGAAG CAGATGCGCC CCTTCATAGA GGCGCTGTCG
GGAATCGCGG AGAGTTACGT AAGCGTTTAT CCCAATGCCG GACTGCCCAA CGAGTTCGGA
GAGTACGACG ACTCTCCGGC ATACATGGCT GCCCAGATCG CCGGGTTCGC CGAATCAGGA
TTCGTCAACA TCGTCGGAGG GTGCTGCGGC ACCACGCCAC AGCATATCAA GGCTATAGCC
GATGCGGTCA GCTCCCTGAA ACCCCGCCGA AAACCGGAAC CGAAACATGA ACTGCAGCTT
TCGGGCCTCG AACCGCTGAT GGTCAACCAG ACAACCGGAT TCATCAACGT CGGTGAACGC
ACCAACGTGA CAGGATCGCG CAAATTCGCC CGCCTCATCA AGGAGGGCAA CTACGACGAA
GCGCTCTCCA TTGCACGCCA GCAGGTCGAA AGCGGCGCCC AGGTTATCGA CGTGAATGTC
GATGAAGGCA TGCTCGACAG CGAAAAGGTG ATGAAGGAGT TTCTCAACCT GATCGCTTCA
GAACCGGAAA TCTCCCGGGT GCCGGTCATG ATCGACAGTT CCAGATGGTC TGTCATCGAA
GAGGGGCTGC AGTGCGTCCA GGGAAAAAGC ATCGTCAACT CCATCAGTCT CAAGGAGGGC
GAAGATCCAT TCAGGGAACG GGCGCTGAAA ATCCTGCAGT ACGGCGCCGC TGCAGTTGTC
ATGGCGTTTG ACGAACAGGG CCAGGCCGAC AGCCTTGAAC GAAGAAAGGA AATATGCGGC
AGGGCATACG ACATCCTGAC CCGTGAAGTC GGCTTCCCTC CCGAAGACAT TATTTTCGAT
CCGAACGTGC TGACCGTTGC AACCGGCATC GACGAACACA ACAACTACGC CCTCGACTTT
ATCGAGTCGG TTCGGTGGAT CAGGGAGAAC CTCCCCTATG CGAAAGTATC GGGAGGCATC
AGCAACGTAT CCTTCTCCTT CCGGGGCAAC GAACCGGTTC GCGAAGCCAT GCATGCGGCA
TTCCTCTATC ATGCCATCCG GGCCGGACTC GATATGGGCA TCGTCAATGC AGGCCAGCTG
GCCATCTATG AGGATATCGA GCCCACACTG CTCGAGCTGG TTGAGGATGT GCTCTTCAAC
CGTCGCCCGG ATGCCACGGA ACGGCTGGTG AGCCATGCCG AAACCATCCG TGAAGGCGGC
GAAAAAATTG AAGCAAAAGC AGCGGAATGG AGAAATGCCC CCGTTGAGGA ACGGCTCCGC
CATGCGCTCG TCAAAGGAAT CGTTGAATAT ATCGATGTCG ATACTGAAGA GGCGCGGCAG
CTCTATCCAA GCCCGTTACA GGTGATCGAG GGACCGCTTA TGGACGGCAT GAACACCATC
GGCGACCTCT TTGCCGAAGG GAAGATGTTT CTTCCCCAGG TGGTCAAGAG CGCCCGCGTC
ATGAAACGCT CGGTTGCCTG GCTCATTCCC TACATCGAAG AGGAAAAGGC TCAGCAGAAA
AACAGCAAAC CTGCCGCAAG AGTACTGCTC GCCACAGTGA AAGGCGATGT GCACGACATC
GGCAAAAACA TCGTTTCGGT CGTCCTCTCC TGCAACAACT ACGAGGTTAT CGACATCGGG
GTCATGATGC CGTGCGACAG GATACTCGAT GCCGTCGAGC GAGAAAAAGC CGACATCCTC
GGCCTCTCCG GCCTCATCAC CCCCTCGCTC GACGAGATGG TGCATGTCGC CCGAGAAATG
GAACGGCTCG GCATGAAAAT ACCGCTGCTC ATCGGAGGAG CCACAACGTC GAAAATGCAT
ACCGCGGTCA AAATAGCGCC GGTCTATTCA GGCCCTGTCG TACAGGTGCT CGACGCTTCG
CGAAGCGTTC CGGTTGTCAG CAGCCTGCTC AATCCGATGC TCTGCGACGA CTACCTTGCC
CGGTTGAAAG CAGACCAGGC TACCATGCGC CAGAGCCACG AATCGCGCTC AAGAGAGAAA
AAATATCTCT CTATCGAAGA TGCGCGGAAA AACCGTCCCG ACCTGCAGTG GGACGAAACA
ACCGTCCGGA CGCCACTTAA AACGGGCATA ACCCTCTTCG AGGATGTGAC CGTCAGCGCT
CTTCGCCCCT ACATCGACTG GACGCCCTTC TTCCTCACCT GGGAACTCCA CGGCCGTTAT
CCCGAAATTT TCGGGAACGC GAAATTCGGC AGTGAAGCCA GACAGCTGTT CGACGATGCG
AACGAACTGC TCGATACAAT CGACCGGGAA AAACTGCTCG GGCTGAAAGG CGTGGCCGGT
ATTTTTCCGG CAAACAGCAG CGGAGACGAT GTTGTCATCT ACACGGACGA TAACCGTTCA
TCGGCGCTCA TGCAGGTGCA CACCCTGCGC CAGCAGCAGG AAAAACAGGA GGGCGAACCC
AATCTTGCCC TGGCGGATTT CATCGCCCCT GAAGAGAGCG GCATCAGGGA TTATATCGGA
GCTTTCGCCG TCACGGCGGG ACTCGGCATC GAAAAAACTC TCAACCGGTT CAGCCTTGAG
CAGGACGACT ACCGCCGCAT CCTGACGCAG GCGCTGGCCG ACCGACTTGC GGAAGCCTTT
GCCGAAATGC TGCACGAAAA GGTGCGCCGA GAACTCTGGG GCTATGCTCC CGCAGAAATT
CTCGGCAGCG AGGAGCTGCT CAGTGAAAAA TACCGGGGAA TCCGACCGGC TCCAGGTTAT
CCGGCCTGCC CCGACCATAC GGAAAAAGCC GAGCTCTTCA CCCTGCTGAA CGCCGAAACG
AACACCGGCA TCACCCTTAC CGAAACCTAT GCCATGAACC CGGCAGCCTC GGTGAGCGGT
TTCTACTTCG CCCATCCGGA AGCCCGGTAT TTCGTGCTCG GCAAAATAGG CAGGGATCAG
GTCGAGGATT ACGCCCTTCG CAAGGGCATG AGCGTGCAGG AAACCGAAAA ATGGCTCGCA
CCCGCACTGA ACTACGACCC GGAGTAG
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| Protein sequence | MKNTLLQLLE QRILVLDGAM GTMIQRHKLQ EADYRGERFA SHDHPLIGNN DMLVLTQPDI
IYAIHCDFLE AGSDIIETNT FNANPISQGD YNAVELVREL NLEAARLARK AADAYSAKTP
DKPRFVAGSI GPTNKTLSLS PDVNNPGYRA VTFREVVDNY IVQLEGLMEG GVDLLLIETV
FDTLNCKAAL FAVEEYFNAI GRRVPVMVSG TVVDASGRTL SGQTTEAFWI SIAHMPDLIS
VGLNCALGSK QMRPFIEALS GIAESYVSVY PNAGLPNEFG EYDDSPAYMA AQIAGFAESG
FVNIVGGCCG TTPQHIKAIA DAVSSLKPRR KPEPKHELQL SGLEPLMVNQ TTGFINVGER
TNVTGSRKFA RLIKEGNYDE ALSIARQQVE SGAQVIDVNV DEGMLDSEKV MKEFLNLIAS
EPEISRVPVM IDSSRWSVIE EGLQCVQGKS IVNSISLKEG EDPFRERALK ILQYGAAAVV
MAFDEQGQAD SLERRKEICG RAYDILTREV GFPPEDIIFD PNVLTVATGI DEHNNYALDF
IESVRWIREN LPYAKVSGGI SNVSFSFRGN EPVREAMHAA FLYHAIRAGL DMGIVNAGQL
AIYEDIEPTL LELVEDVLFN RRPDATERLV SHAETIREGG EKIEAKAAEW RNAPVEERLR
HALVKGIVEY IDVDTEEARQ LYPSPLQVIE GPLMDGMNTI GDLFAEGKMF LPQVVKSARV
MKRSVAWLIP YIEEEKAQQK NSKPAARVLL ATVKGDVHDI GKNIVSVVLS CNNYEVIDIG
VMMPCDRILD AVEREKADIL GLSGLITPSL DEMVHVAREM ERLGMKIPLL IGGATTSKMH
TAVKIAPVYS GPVVQVLDAS RSVPVVSSLL NPMLCDDYLA RLKADQATMR QSHESRSREK
KYLSIEDARK NRPDLQWDET TVRTPLKTGI TLFEDVTVSA LRPYIDWTPF FLTWELHGRY
PEIFGNAKFG SEARQLFDDA NELLDTIDRE KLLGLKGVAG IFPANSSGDD VVIYTDDNRS
SALMQVHTLR QQQEKQEGEP NLALADFIAP EESGIRDYIG AFAVTAGLGI EKTLNRFSLE
QDDYRRILTQ ALADRLAEAF AEMLHEKVRR ELWGYAPAEI LGSEELLSEK YRGIRPAPGY
PACPDHTEKA ELFTLLNAET NTGITLTETY AMNPAASVSG FYFAHPEARY FVLGKIGRDQ
VEDYALRKGM SVQETEKWLA PALNYDPE
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