Gene Clim_2046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_2046 
Symbol 
ID6355024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand+ 
Start bp2255323 
End bp2255949 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content52% 
IMG OID642669642 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_001944054 
Protein GI189347525 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.278718 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCATG TACGAAAACA TTTCGGAAGC ATCCTGAAAA CTCTTGCCCT TCCGGTTCTG 
CTTGGAGGTA TGACGGTTTT TTCTTCCTGC GCCAGCCCGT CTTCAAAGGA AATCGACAAC 
CTGCAGCAGC AGGTCTGGAA AAACTCAGGC GATGCCGACG CATGGTTCCG TCTCGGCAAT 
GCCTTTGCGA GAAACGAACA GTACCGCAAA GCCTCGGAAG CCTATCGTGA GGCGCTCTCG 
ATCGATCCCG AAAAAGAACA GCTCCTCGCC GCTCTTGGAG CCGCCAGCTT CAATCAGGGC 
AACTACCGGG AGGCTCTCGT CTATTTCACG AAATACCAGG CACTTGCCCC GGACGACTCG 
CTGAGAAACT ACGATATTGG CAATGTGCTC CTGCAGATGC GGGAGTACGA CAAAGCCATT 
GCGGCATACA GAAGGGCCAT TGAAAACAGC GTCTCTTTTG ATGAGGCCTA CTACAATCTG 
GGCGTCTGCT ACGCCCGCAC CGGAAGAGCG GCTGAAGCCG AAGAAATTTA TGAGTTGCTT 
GTTAAGAAAA ACAATTATCT TGCCGTCTCT CTGAAAAACC ATTTCAAGAG TGCGGATTCC 
GCACGGCAGA AGGCTCCGAA ACCGTAA
 
Protein sequence
MIHVRKHFGS ILKTLALPVL LGGMTVFSSC ASPSSKEIDN LQQQVWKNSG DADAWFRLGN 
AFARNEQYRK ASEAYREALS IDPEKEQLLA ALGAASFNQG NYREALVYFT KYQALAPDDS 
LRNYDIGNVL LQMREYDKAI AAYRRAIENS VSFDEAYYNL GVCYARTGRA AEAEEIYELL 
VKKNNYLAVS LKNHFKSADS ARQKAPKP