Gene Clim_1969 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1969 
Symbol 
ID6355473 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp2185455 
End bp2186339 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content56% 
IMG OID642669567 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001943980 
Protein GI189347451 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000000507932 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCCGC GGCAAAGCAA TAAACGCCCA TCAGCAGAGG GGATTGACCG TTCCCGGCAG 
AAGGGGCGGC TTGAAGGCCG GGTTGCCGTC ATTACCGGTT CGACGAGAGG CATCGGCAAG
GCCATCGCCC GACGGTTCGT CGATGAAGGC GCCAGGGTTG TCATCACCTC TTCATCACCG
CACAACGTTG ATGCCGCTGT TGCTGCATTT GTTCCGGGAA CCGTTTACGG TTATGCCTGC
GACGTCAGTT CTCCGGCTGA AATGGAACGC CTTGTCGAAG CTTCGGCAGC CCGTTTCGGC
AGAATCGACT GTTTTATCAA CAATGCCGGC ATATCGGATC CGTTCGGCAA TATTACCTCC
AGTGATCCCG CTCAATGGGG ACGGGTGATC GATACCAACC TCAAAGGCAC CTACAACGGC
TGCCGGGCGG CAATCGGTTA TTTTCTTCGC GAAAATATTT CCGGCAAGAT AATCAACATG
GCCGGGTCAG GCACCGATCG CGGATCGAAT ACTCCTTTTA TTACGGCGTA TGGCTCCACC
AAGGCCGCCA TTGCCCGCTT AACCTTTGCT GCGGCCGCCG AGTACCGCCA GAGCGATCTT
TCCATCATGC TGCTTCACCC AGGGCTTGTA CGTACCGGCA TGGTCAGCGC CGAAAATCCG
ACGCCCGAAC TTCTCCGGCA GCTTGCTACA TTCAACACCA TTCTCGATAT TTTTGCCCAG
CCACCATCGG TTGCCGCAGG ACTGGCCGTG AAAATGGCCT CATCCTGGAG TGACCGCAAA
ACCGGCATCT ATCTTTCCGC GTTGAACGAA TGGACAAAAA AGAGGTTGCT CCTCAGTTAT
CCCTTCCGTA AACTGACCGG CAGGATAGAG CGGGAAACCT ATTAA
 
Protein sequence
MAPRQSNKRP SAEGIDRSRQ KGRLEGRVAV ITGSTRGIGK AIARRFVDEG ARVVITSSSP 
HNVDAAVAAF VPGTVYGYAC DVSSPAEMER LVEASAARFG RIDCFINNAG ISDPFGNITS
SDPAQWGRVI DTNLKGTYNG CRAAIGYFLR ENISGKIINM AGSGTDRGSN TPFITAYGST
KAAIARLTFA AAAEYRQSDL SIMLLHPGLV RTGMVSAENP TPELLRQLAT FNTILDIFAQ
PPSVAAGLAV KMASSWSDRK TGIYLSALNE WTKKRLLLSY PFRKLTGRIE RETY