Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Clim_1944 |
Symbol | |
ID | 6354999 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium limicola DSM 245 |
Kingdom | Bacteria |
Replicon accession | NC_010803 |
Strand | - |
Start bp | 2155645 |
End bp | 2157618 |
Gene Length | 1974 bp |
Protein Length | 657 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642669542 |
Product | ABC transporter related |
Protein accession | YP_001943955 |
Protein GI | 189347426 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.819386 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGACCTA TCCTTGAACT TCGCGATGTC CACCGGACAT ACCGAATAGG CGAAAGCACG GTCCATGCCC TGAGAGGCGT GTCGCTTACC GTTGAACAGG GGGAGTTCAT AGCGATCATG GGCGCATCGG GATCAGGGAA ATCATCGCTG CTTCATATTC TCGGTCTGCT TGACAACCCC GACAAGGGAG AATACCGGAT TCTCGGCAAT AACGTCAATA CGCTCTCCGG GGACGAACAG GCCGGTTTGC GCAACAATGT TGCCGGCTTT GTCTTTCAGC AGTTTCATCT GCTCCGGCGA ATGACCATCG TGGACAATGT CCGGCTGCCG CATATCTACA GCGGTCTCAA AGGAGATTTC CGCCAGGAGG CGGCCAGGCG CCTTGCACTT GTAGGGCTTG AAAAAAGGAT CGATCACACG CCGAACCAGC TTTCCGGAGG CGAACAGCAG CGGGTTGCCA TAGCCAGGGC TCTTGTTCGC GATCCGCTGC TCATTTTTGC AGACGAACCG ACGGGAAACC TCGATACGAA AAATTCGTAC GAGATCATGA AAATACTCAA AGGGCTTCAT GAGCAGGGTA AAACCATCAT CATGGTTACC CACGAGACCG ACATCGCCGC CTATGCCGAA AGGGTGATTA CCATGCGTGA CGGGACTATT GTCACCGACG AACGCAGAGA AAGCCCTGAA CGCAAGTCCA TTCCTGTCGA AACTGCCCGT TTCGACCTGC ATGCAGGCGG CAGGCGGACC CTGCTGCAAT CCGGGCGTTT TTCCGTGTTC ATGGCGCAGG CGTTTCAGTC GATTCTCTCC AACAAGGTAC GCTCACTTCT TTCGGTTCTC GGCATTCTTG TCGGTGTCGC CTCGGTGATC GCCATGATGG CGCTCGGCGA AGGAGCCAAA GCCGCCATGC AGCAACAGCT CAAATCCATG GGCTCGAACC TCCTCTCCGT AAGGGGAGGG TCGGCGAAAA TTCGGGGCGC TGCAAGCGGG GCAGGCGCGG TTACCCGGTT TACGGTCAAA GATGTCGAGG CGATCGCATC TCTCGGGTCA CTGGTAAAAA ATGCTACAGG AGTGGTAAGC GGAAGCGCTC AGACTGTTTT TGAAAACAAA AATTGGAACA CCAACCTTGA AGGGGCTGGC TATGATTACG GGGTCATGCG TTCAACCATA CCGACAATCG GGCGGTGGTT CAGCAGGGAG GAAATGCAGA AGCGCGAAAA GGTTGCCATT ATAGGTGTAA CGGTCGCCAA AGAGCTTTTC GGAACCGGAA ACCCGATCGG ACGGACCATC AAAATCAACA GAATTAATTT CAAGGTTATC GGGATCGCTC CGGTAAAGGG TTTTTCCGGT CCCCGGGACG AAGACGATAT CGTCATCATT CCCCTCACGA CCGCCATGTA CCGGGTACTT GGCAAGGATT ATCTCAGCGG CATCTTTGTT GAAGCAAGGC AGTCTTCAGG CATTGAGCGG ACGAAAAACA CAATCAGCGA GTTGATCCGC AAGCGTCACC GGTTGCATTC CGACGACGAC TCCTTCAACA TTCGCGATAT GACCGAAATT CAGAAGATGC TCACCAGTAC CACTGAGACC ATGAGCATGC TGCTCGGTTC GATTGCGGCA ATATCGCTTC TGGTCGGAGG CATCGGCATC ATGAACATCA TGCTGGTTTC GGTAACCGAA CGCACCCGTG AAATCGGTCT CAGAAAAGCC ATCGGTGCAA GAAAAAACGA TATTATGCTG CAGTTTCTCG TGGAGTCCGT CGGCCTGACC ATCAGTGGAG GAGTTATAGG CATCATGATC GGTATCGGAG TGTCACTGCT TTTATCGTTA TTTGCCGGAT GGGCAGTGAA AACCTCGATT TTCTCTGTCG TGCTCGCTAC GGTATTTTCT GTCATTACCG GTCTTTTTTT TGGTCTCTGG CCGGCCAGGA AAGCGGCGGA ACTCAATCCG GTTGAAGCCT TGCGCTACGA ATAG
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Protein sequence | MRPILELRDV HRTYRIGEST VHALRGVSLT VEQGEFIAIM GASGSGKSSL LHILGLLDNP DKGEYRILGN NVNTLSGDEQ AGLRNNVAGF VFQQFHLLRR MTIVDNVRLP HIYSGLKGDF RQEAARRLAL VGLEKRIDHT PNQLSGGEQQ RVAIARALVR DPLLIFADEP TGNLDTKNSY EIMKILKGLH EQGKTIIMVT HETDIAAYAE RVITMRDGTI VTDERRESPE RKSIPVETAR FDLHAGGRRT LLQSGRFSVF MAQAFQSILS NKVRSLLSVL GILVGVASVI AMMALGEGAK AAMQQQLKSM GSNLLSVRGG SAKIRGAASG AGAVTRFTVK DVEAIASLGS LVKNATGVVS GSAQTVFENK NWNTNLEGAG YDYGVMRSTI PTIGRWFSRE EMQKREKVAI IGVTVAKELF GTGNPIGRTI KINRINFKVI GIAPVKGFSG PRDEDDIVII PLTTAMYRVL GKDYLSGIFV EARQSSGIER TKNTISELIR KRHRLHSDDD SFNIRDMTEI QKMLTSTTET MSMLLGSIAA ISLLVGGIGI MNIMLVSVTE RTREIGLRKA IGARKNDIML QFLVESVGLT ISGGVIGIMI GIGVSLLLSL FAGWAVKTSI FSVVLATVFS VITGLFFGLW PARKAAELNP VEALRYE
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