| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1802 |
|---|
| Symbol | |
|---|
| ID | 6354631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | + |
|---|
| Start bp | 1980158 |
|---|
| End bp | 1980847 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642669405 |
|---|
| Product | alanine racemase domain protein |
|---|
| Protein accession | YP_001943820 |
|---|
| Protein GI | 189347291 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCAA TCACCGAAAA TCTTGATGCG ATCAGGCAGC GCATCGCCCA TGCCTGCCTG
AAAGCTCGCA GAGACCCGGC AACGGTAACG CTGCTTGCTG TCTCAAAAAC CAAATCGGCA
TCCCGCATCA GAGAGGCGTT CGATGCCGGG CAGATTGATT TCGGGGAAAG TTACATGCAG
GAATTTCTCG ATAAGGAATC AGATCCTCTT CTTGAAAACC AGCCTATCCG CTGGCATTTC
ATCGGGCACC TGCAATCGAA CAAGGTACGC TCGATTATCG GCAAAGTCGT GCTGATTCAC
GGCATAGACA AGCTCTCAAC CGCAGAGGAA CTCTCCGGAA GGGCCGTCCG GCAAAATCTT
CAGGCCGATT ACCTGCTTGA AGTGAACACC TCGGGAGAAG CCTCGAAATA CGGACTTAAA
CCCGAAGAGC TTCTCCGGCA GGCGCCGTCG TTCTTCATGC TCCCGAACTG CACGCTGCGG
GGACTCATGA CCATAGCATC CCCCGACCCG GCTCTTGCCC GTTACGAATT CCGCAGTCTG
AGCCGTCTTC TCGACGATCT CAAAAAAATC GCGCCCGATC CGTCGACACT GACGGAGCTT
TCCATGGGCA TGAGCCAGGA TTTCGAAGCT GCCATAGCGG AGGGAGCCAC ACTTATCCGC
GTCGGAACCG CAATATTCGG CTGGCGCTGA
|
|---|
| Protein sequence | MESITENLDA IRQRIAHACL KARRDPATVT LLAVSKTKSA SRIREAFDAG QIDFGESYMQ
EFLDKESDPL LENQPIRWHF IGHLQSNKVR SIIGKVVLIH GIDKLSTAEE LSGRAVRQNL
QADYLLEVNT SGEASKYGLK PEELLRQAPS FFMLPNCTLR GLMTIASPDP ALARYEFRSL
SRLLDDLKKI APDPSTLTEL SMGMSQDFEA AIAEGATLIR VGTAIFGWR
|
|---|
| |