Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Clim_1686 |
Symbol | |
ID | 6353993 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium limicola DSM 245 |
Kingdom | Bacteria |
Replicon accession | NC_010803 |
Strand | + |
Start bp | 1853679 |
End bp | 1855043 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642669291 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_001943707 |
Protein GI | 189347178 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.000674894 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCAT GGACAGCTCC GAACTATTTT CATGAATCGC AAGACTCCAT GCTCCCAATG TCCTCTCAAG AACAACGTCG TCTCGGCCCG GTACAATTAT CACCGAACAT CCTGCCCCGC CACGGACTGA CATTTCTCTT TTCGGCGTTT TTTTCCATAG GCCTTGTCAC CTTCGTTTCA ATCGGACAGG CCTATATTCT CAATGAAAAC CTGAAAATAC CCGTATCGGA ACAGGGCACA ATAAGCGGCA ACCTTGTTTT CTGGACGGAA ATCGTCACCC TTCTCTTTTT TGTTCCAGCC GGCGTCCTGA TGGACCGGAT CGGACGCAAA CAGGTTTTTA GCGCCGGCTT CCTCCTGCTT GCCCTTGCCT ACGCACTCTA CCCTACTGCG TCTTCGATCG GAGAACTCAC CCTTTTCCGT ATAATTTATG CGCTTGGAAT CGTTGCGGTT ACCGGAGCCC TCTCCACCAT CATGGTTGAC TATCCTGCCG AGCGGTCGCG CGGCAAGCTT ATTGCCATTA CCGGGTTTCT CAATGGCCTC GGTATCGTCG TCCTTAACCA GTTCTTCGGA GCACTGCCCC AGAGGCTGAC CGCCGGAGGC ATGAGCGGAA CTGATGCCGG ACTCTATACC CATTTCGGAA TAGCCGGCAT CGCACTGATC TCGGCAGTTG TGGTCAGTGT CGGTCTGAAA AGCGGAACCC CGGTAAAAAA AGAGGAGCGC CCGCCCCTGA AAAAACTGCT CACCAGCGGT ATAAGCTATA TGAAAAACCC GAGAATCCTG CTCTCATACG GTGCGGCATT TGTCGCACGC GGAGACCAGT CGATCATCGG TACCTTCCTG CCGCTATGGG GAACAACTGC CGGCATCGCC ATGGGCATGG ATCCTGCTGA AGCCGTTAAA AAAGGCACGC TCATCTTTAT CATCTCCCAG GCAGCGGCAC TGCTCTGGGC TCCCGTAATC GGCCCGGTTA TCGACAGGAT GAACCGGGTC AGCGCTCTTG TGCTCTGCAT GTTTCTTGCC AGTGCAGGAT ACCTGTCACT TGGTTTCGTC GGCAACCCTC ATGAACCGTT CTCTCTCTTT TTCTTCATGC TTCTCGGAAT CGGCCAGATC AGCTCTTTCC TCGGAGCACA ATCGCTAATC GGCCAGGAGG CTCCTAAAGC CGAGCGGGGA TCGGTAATCG GCATGTTCAA CATCAGCGGA GCAATCGGCA TTCTTATCAT CACCTCTACA GGAGGCCGGC TTTTTGACGG AATGAGCCCG AAAGCTCCCT TTCTTGTTGT CGGCGCTATA AACCTGCTGG TCATGCTTGC CGGAATTCTT GTACGCATCC ATGCGCCGGG AAAAGCTGCC GGGGGTGAAG AATAA
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Protein sequence | MNAWTAPNYF HESQDSMLPM SSQEQRRLGP VQLSPNILPR HGLTFLFSAF FSIGLVTFVS IGQAYILNEN LKIPVSEQGT ISGNLVFWTE IVTLLFFVPA GVLMDRIGRK QVFSAGFLLL ALAYALYPTA SSIGELTLFR IIYALGIVAV TGALSTIMVD YPAERSRGKL IAITGFLNGL GIVVLNQFFG ALPQRLTAGG MSGTDAGLYT HFGIAGIALI SAVVVSVGLK SGTPVKKEER PPLKKLLTSG ISYMKNPRIL LSYGAAFVAR GDQSIIGTFL PLWGTTAGIA MGMDPAEAVK KGTLIFIISQ AAALLWAPVI GPVIDRMNRV SALVLCMFLA SAGYLSLGFV GNPHEPFSLF FFMLLGIGQI SSFLGAQSLI GQEAPKAERG SVIGMFNISG AIGILIITST GGRLFDGMSP KAPFLVVGAI NLLVMLAGIL VRIHAPGKAA GGEE
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