| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1663 |
|---|
| Symbol | |
|---|
| ID | 6353970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 1818580 |
|---|
| End bp | 1821054 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642669268 |
|---|
| Product | Hemolysin-type calcium-binding region |
|---|
| Protein accession | YP_001943684 |
|---|
| Protein GI | 189347155 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.157908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG CTGTAGTCTT TATCGATAGT CGTGTTCGAA ATTTCGAGCG GATCATATCC
GATTTGCCGG ATGATGCCCG GTATGTGATA CTTTCACCTC AGGAGGATGG ATTAGAACAG
ATCTTTTCCG CTATACGTTA TCCCGTCGCA TATGATTCAA TCAGCATTAT CGCATACGGT
GATCAGGGTG CTGTTGCGAT TGGTTCTACC GTATTGACGA CAGACAATCT TGAACTTCAT
AAAGATGAGC TGATCCGTTT AGGCGATATG CTTGCGGATG ATGCGGATCT GTTACTGTAT
GGCTGCAATA TCGGTCAAGG AGATAAGGGC AGGAAGTTTG TGTCCGATCT TTCAGCATAT
ACGAAAGCGG ATGTTGCTGC GTCGGATGAC CGCACGGGTC CTGAATGGAA CCTTGAAGTT
GCTGCAGGTA CAATAGAACC ATCGTCATTT ATTACGGTTT CAAGCGAATA TGGTGACCAC
CTTGGAGTAC TGACCGGTAC TGATGGTGAT GATTTCATCA CAGGCGAGTG GACGGATGAT
TATCTGTTTG GTCTCGACGG GAACGACATG CTGTACAGTT ATGAGGGAAA CGATACCATC
GAGGGAGGAT CAGGCAACGA TCTTATTGAC GGTGGACTCG ATCATGATCT TCTCTATGGA
GGTGAAGGAG ACGATACGGT TTATGGCGGC GTGTATTTCG ATTATTCCTG GTATGGCTGG
ATGAGCGGTG ACGACTCCAT TTACGGAGAT GCCGGGAATG ATTTTCTTGA TGGCAGTTAT
GGACAGGATA TTCTTGATGG CGGTGCAGGT GACGATATAC TGCATGGCGG TTCCGGACTC
GATACGCTCA CGGGAGGAAA CGGGAATGAT ACGCTTTACG GCGGCGAGTA CGATGATACG
CTTGGGGGTG GCGCCGGTAA CGATCTGCTG TATGGCATGG ATGAGCAGTT CGACGAGTAT
TCATCCGATT TGCTGCATGG CGATGATGGT GATGATACGT TGTATGGTGG AAACGGACAG
GATCAGCTAT ACGGGGGTAT CGGCAACGAT ACGCTGGATG GAGGAGACGG AAGCGATATG
CTCGATGGCG GAGATGACCA TGACTCTCTC GACGGTTCAT TAGGTAATGA TATGATCATC
GGGTCGGCTG GCAACGATAC GCTTTCGGGC GGTATGGTTT ATGACGATGA TTTTCAAGGG
TGGTTGAGTG GTGATGATAC GCTCTATGGT GATAGCGGAT TCGACAGTCT TGACGGCGGA
GCGGGTAATG ATCTGTTGTC AGGCGGCGAA GACAACGATA CGCTTTCAGG AGGTGCCGGT
GACGATATGC TTGACGGCGG CGGGGGTATT GACAGTATGT CGGGAGGAAG TGGTGATGAT
ACCTATTACA TAGACAATTC AAAGGATACC GTTTATGAGT CAAGCGGGGC CGGTACAGAT
ACGGTTCATT CTTCTATTAA CTACACCCTC CGAACGAATT TCGAACATCT CGTTTTATCC
GGGACATCAG CCATCAATGC TACCGGTAAC AGTGCAGAAA ATAATATTAC CGGTAACGAT
GCCAACAACA TCATCAGTGG TGGAGCAGGT AATGATGTTT TGACGGGCAA CGGAGGAAAT
GACCGGTTGA ACGGTCAGAC AGGAGACGAT GTGTTATACG GAGGCGGTGG TAACGATACG
CTCAACGGCG GTGATGGAAA CGAAACGCTG TATGGAGGTG ATGGAAATGA CTTGTACTAT
GTAAGCAGTT CCGGAACCAT CCTTGTTGAA GAAGACGTTT CCGGATACGA TACCGTTTAC
ACAACCGTCA ATTATCTGCT TCCGGAATAT GTGGAATCGA TGTTATTTAT GGGTTCGTTC
TCGTTAGAGG GAACAGGAAA CGGCCAGGAT AATCTTCTTA CAGGCAACAG CGCGGAGAAC
AGTATCAATG GACTTGGAGG TAATGATACG CTCAATGGTG CTGCGGGGAA CGATATTCTT
TTAGGAGGAG CTGGCAACGA CTTGCTTGAG GGTGTTTCCG GTAATGACAT TTTGCTGGGT
GAGGAGGGTG CCGATATATT GAAGGGGGGA TCAGGGGCCG ATGCCCTGTA TGGTGACGCT
GGTGATGATA CCTTATTCTT TGATCTATCA GATTCTGTCA TCGATGGAGG ACAGGGAATG
GACAGGCTGG TATTCGAGCA AAGCGGCACA TTCGATTTCA GTGGTTTTGG GGCGGTTCTC
GATGTTGAGA TAATTGATTT GTCTGCTTCC GGCAGACACA GAATTTCCCA ACTATCCGCT
TCGGACGTGT CCGAATTCAC GGGGGGCAGC AACAATCTCT ATATTATGGG AAGTAGCGCT
GACGGTGTGA ATTTTGCCGG TACATGGTCT GCTGGTGATG CAGTGATTCA CGATGGTATT
GCATACAACC CCTACACCAG TGCCTCAAGC CCTGATATTA CTGTTTTGAT ACAGCAATCC
GTTTCGATAT TCTGA
|
|---|
| Protein sequence | MSNAVVFIDS RVRNFERIIS DLPDDARYVI LSPQEDGLEQ IFSAIRYPVA YDSISIIAYG
DQGAVAIGST VLTTDNLELH KDELIRLGDM LADDADLLLY GCNIGQGDKG RKFVSDLSAY
TKADVAASDD RTGPEWNLEV AAGTIEPSSF ITVSSEYGDH LGVLTGTDGD DFITGEWTDD
YLFGLDGNDM LYSYEGNDTI EGGSGNDLID GGLDHDLLYG GEGDDTVYGG VYFDYSWYGW
MSGDDSIYGD AGNDFLDGSY GQDILDGGAG DDILHGGSGL DTLTGGNGND TLYGGEYDDT
LGGGAGNDLL YGMDEQFDEY SSDLLHGDDG DDTLYGGNGQ DQLYGGIGND TLDGGDGSDM
LDGGDDHDSL DGSLGNDMII GSAGNDTLSG GMVYDDDFQG WLSGDDTLYG DSGFDSLDGG
AGNDLLSGGE DNDTLSGGAG DDMLDGGGGI DSMSGGSGDD TYYIDNSKDT VYESSGAGTD
TVHSSINYTL RTNFEHLVLS GTSAINATGN SAENNITGND ANNIISGGAG NDVLTGNGGN
DRLNGQTGDD VLYGGGGNDT LNGGDGNETL YGGDGNDLYY VSSSGTILVE EDVSGYDTVY
TTVNYLLPEY VESMLFMGSF SLEGTGNGQD NLLTGNSAEN SINGLGGNDT LNGAAGNDIL
LGGAGNDLLE GVSGNDILLG EEGADILKGG SGADALYGDA GDDTLFFDLS DSVIDGGQGM
DRLVFEQSGT FDFSGFGAVL DVEIIDLSAS GRHRISQLSA SDVSEFTGGS NNLYIMGSSA
DGVNFAGTWS AGDAVIHDGI AYNPYTSASS PDITVLIQQS VSIF
|
|---|
| |