Gene Clim_1533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1533 
Symbol 
ID6354180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand
Start bp1654245 
End bp1654931 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content53% 
IMG OID642669139 
ProductABC transporter related 
Protein accessionYP_001943562 
Protein GI189347033 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACCCG TCATCATCAG CATGGTATCG CTCTGCCGGT ACTACGAAAT GGGCGACCAG 
ATCGTCAAGG CGCTCGACAA TATCAACATG GAGTTCAGGC ACAACGATTA TGCTGCCATC
ATGGGGCCTT CCGGAAGCGG AAAATCGACG CTCATGAATA TGATCGGCTG TCTCGACACC
CCGACGTCCG GAATCTATGA GCTCAACGGC ACCAACGTCG CTGAAATGGA TGACGATGAA
CTGGCAAGGG TGAGAAACCG GGAAATCGGT TTTGTTTTTC AGACCTTCAA TCTGCTGCCC
CGCATGAACT GTCTGAAAAA TGTCGAGTTG CCTCTGATTT ACGCCGGAGT GCCTCCCGAA
GAACGCCATG AGCGTGCCGA ACAGGCTCTG CTCAGCGTCG GACTCGGCGA CCGGATACAG
CACAAGCCAT CCGAATTATC GGGTGGACAG ATACAGCGCG TTGCCATAGC AAGGGCACTG
GTCAACAAGC CCTCCATCAT TCTTGCCGAT GAACCGACCG GCAACCTCGA CACTGCAACA
AGCCACGATA TCATGGAGAT GTTCGGAAAA CTTTCCAACG AAGGCAATAC CATCATCCTC
ATTACCCATG AAGAGGACAT CGCCCGCTTT ACCCACAGGA TTATCCGCCT GCGGGACGGC
AGAATCGAAA GCGATGAACG TCAATGA
 
Protein sequence
MEPVIISMVS LCRYYEMGDQ IVKALDNINM EFRHNDYAAI MGPSGSGKST LMNMIGCLDT 
PTSGIYELNG TNVAEMDDDE LARVRNREIG FVFQTFNLLP RMNCLKNVEL PLIYAGVPPE
ERHERAEQAL LSVGLGDRIQ HKPSELSGGQ IQRVAIARAL VNKPSIILAD EPTGNLDTAT
SHDIMEMFGK LSNEGNTIIL ITHEEDIARF THRIIRLRDG RIESDERQ