Gene Clim_1533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_1533 
Symbol 
ID6354180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand+ 
Start bp1654245 
End bp1654931 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content53% 
IMG OID642669139 
ProductABC transporter related 
Protein accessionYP_001943562 
Protein GI189347033 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACCCG TCATCATCAG CATGGTATCG CTCTGCCGGT ACTACGAAAT GGGCGACCAG 
ATCGTCAAGG CGCTCGACAA TATCAACATG GAGTTCAGGC ACAACGATTA TGCTGCCATC 
ATGGGGCCTT CCGGAAGCGG AAAATCGACG CTCATGAATA TGATCGGCTG TCTCGACACC 
CCGACGTCCG GAATCTATGA GCTCAACGGC ACCAACGTCG CTGAAATGGA TGACGATGAA 
CTGGCAAGGG TGAGAAACCG GGAAATCGGT TTTGTTTTTC AGACCTTCAA TCTGCTGCCC 
CGCATGAACT GTCTGAAAAA TGTCGAGTTG CCTCTGATTT ACGCCGGAGT GCCTCCCGAA 
GAACGCCATG AGCGTGCCGA ACAGGCTCTG CTCAGCGTCG GACTCGGCGA CCGGATACAG 
CACAAGCCAT CCGAATTATC GGGTGGACAG ATACAGCGCG TTGCCATAGC AAGGGCACTG 
GTCAACAAGC CCTCCATCAT TCTTGCCGAT GAACCGACCG GCAACCTCGA CACTGCAACA 
AGCCACGATA TCATGGAGAT GTTCGGAAAA CTTTCCAACG AAGGCAATAC CATCATCCTC 
ATTACCCATG AAGAGGACAT CGCCCGCTTT ACCCACAGGA TTATCCGCCT GCGGGACGGC 
AGAATCGAAA GCGATGAACG TCAATGA
 
Protein sequence
MEPVIISMVS LCRYYEMGDQ IVKALDNINM EFRHNDYAAI MGPSGSGKST LMNMIGCLDT 
PTSGIYELNG TNVAEMDDDE LARVRNREIG FVFQTFNLLP RMNCLKNVEL PLIYAGVPPE 
ERHERAEQAL LSVGLGDRIQ HKPSELSGGQ IQRVAIARAL VNKPSIILAD EPTGNLDTAT 
SHDIMEMFGK LSNEGNTIIL ITHEEDIARF THRIIRLRDG RIESDERQ